Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31005
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)                  34   0.17 
SB_37422| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_25569| Best HMM Match : DUF600 (HMM E-Value=1.3)                    32   0.52 
SB_49954| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_14895| Best HMM Match : CcmE (HMM E-Value=5.3)                      29   6.4  
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)            28   8.5  
SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)
          Length = 130

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 125 HSPCRILHLKPQPILVSATTMMRNAYTLTINGYRSCCSSRAYFLH 259
           H PCRI H    P  +S    +   Y+LTI+    CC+ RA F H
Sbjct: 5   HCPCRI-H---SPYTLSVFAALSVPYSLTIHAQSVCCTVRAVFTH 45



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +2

Query: 125 HSPCRILHLKPQPILVSATTMMRNAYTLTINGYRSCCSSRAYFLH 259
           H PCRI H    P  +S    M   Y+LTI+  R C ++RA F H
Sbjct: 54  HCPCRI-H---SPYTLSVFAAMSVPYSLTIHAQRVCGTARAVFTH 94


>SB_37422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 438 EVLN-FANVVGNIFFLDTFLGRRILTYGTDVVRFSNMNQEQRTDPMI 575
           E+LN F N+ G   +L     R +L YG D+     + Q+Q+TDP I
Sbjct: 6   ELLNKFENIAGVQLYLHDKYQRVLLQYGRDLETCRKIYQKQKTDPPI 52


>SB_25569| Best HMM Match : DUF600 (HMM E-Value=1.3)
          Length = 271

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 438 EVLN-FANVVGNIFFLDTFLGRRILTYGTDVVRFSNMNQEQRTDPMI 575
           E+LN F N+ G   +L     R +L YG D+     + Q+Q+TDP I
Sbjct: 150 ELLNKFENIAGVQLYLHDKYQRVLLQYGRDLETCRKIYQKQKTDPPI 196


>SB_49954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 267 WIWKNWEEGKVRLISEGMRGTMASIADDKNNR 362
           WIW +W++ K  L +EG R ++ +   ++ +R
Sbjct: 66  WIWASWQDTKESLKTEGTRRSLKAALKERGHR 97


>SB_14895| Best HMM Match : CcmE (HMM E-Value=5.3)
          Length = 485

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = -1

Query: 611 MECTFSNSRENFDHWICSLLLIHIGESDYVGAVGQNAPPKECVQEKYVSHDISEI*HFAE 432
           ++   S++R  FD++  S L IH+  S   G    +      +   +V+  +  +     
Sbjct: 184 VQAALSDTRNYFDYFHLSPLKIHVSFSQLGGPASDDKSGGIEIGSSFVNLLMQSVGVAVT 243

Query: 431 EVTE-GVSVVHVQRIQQILNESILTIVFVISYTGHCASHAF 312
           EV +    + + + + Q+ N+  LT   +  YTG      +
Sbjct: 244 EVQDVEFKLAYFEILNQVYNQQQLTGAIIKHYTGQAIKQMY 284


>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
          Length = 1139

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 315 GMRGTMASIADDKNNRQNRLVQYLLDTLHMH 407
           G  G   S+ ++   RQN   QY  DTLH H
Sbjct: 4   GKTGGRKSLLENWKFRQNTCKQYYTDTLHCH 34


>SB_11191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1577

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 173  SATTMMRNAYTLTINGYRSCCSSRAYFLHSSLDLE 277
            S+T MM+NAY        SCC +RA  L   +DLE
Sbjct: 1255 SSTGMMQNAYVALF----SCCVTRALHLDLVVDLE 1285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,878,282
Number of Sequences: 59808
Number of extensions: 623182
Number of successful extensions: 1766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)