Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31005
         (857 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L22075-1|AAA74235.1|  377|Homo sapiens guanine nucleotide regula...    34   0.76 
BC036756-1|AAH36756.1|  377|Homo sapiens guanine nucleotide bind...    34   0.76 
AF493902-1|AAM12616.1|  377|Homo sapiens guanine nucleotide bind...    34   0.76 
X14545-1|CAA32681.1|  157|Homo sapiens protein ( Human KT10E mRN...    33   1.0  
BC027624-1|AAH27624.1|  519|Homo sapiens Bardet-Biedl syndrome 4...    31   7.1  
BC008923-1|AAH08923.2|  461|Homo sapiens BBS4 protein protein.         31   7.1  
AY457143-1|AAS13441.1|  527|Homo sapiens Bardet-Biedl syndrome 4...    31   7.1  
AK075321-1|BAC11547.1|  519|Homo sapiens protein ( Homo sapiens ...    31   7.1  
AF359281-1|AAK58868.1|  519|Homo sapiens Bardet-Biedl syndrome t...    31   7.1  

>L22075-1|AAA74235.1|  377|Homo sapiens guanine nucleotide
           regulatory protein protein.
          Length = 377

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 485 HIPWAAHSDLRHRRSQILQYESRATNRSNDRSFPENY*MYIP*VRCLWNDTKTRRA 652
           HIPW  +S+ +H   +++ +++RA   +        +  Y+P +R LW D+  + A
Sbjct: 107 HIPWGDNSNQQHG-DKMMSFDTRAPMAAQGMVETRVFLQYLPAIRALWADSGIQNA 161


>BC036756-1|AAH36756.1|  377|Homo sapiens guanine nucleotide binding
           protein (G protein), alpha 13 protein.
          Length = 377

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 485 HIPWAAHSDLRHRRSQILQYESRATNRSNDRSFPENY*MYIP*VRCLWNDTKTRRA 652
           HIPW  +S+ +H   +++ +++RA   +        +  Y+P +R LW D+  + A
Sbjct: 107 HIPWGDNSNQQHG-DKMMSFDTRAPMAAQGMVETRVFLQYLPAIRALWADSGIQNA 161


>AF493902-1|AAM12616.1|  377|Homo sapiens guanine nucleotide binding
           protein alpha 13 protein.
          Length = 377

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 485 HIPWAAHSDLRHRRSQILQYESRATNRSNDRSFPENY*MYIP*VRCLWNDTKTRRA 652
           HIPW  +S+ +H   +++ +++RA   +        +  Y+P +R LW D+  + A
Sbjct: 107 HIPWGDNSNQQHG-DKMMSFDTRAPMAAQGMVETRVFLQYLPAIRALWADSGIQNA 161


>X14545-1|CAA32681.1|  157|Homo sapiens protein ( Human KT10E mRNA
           for T-cell receptor delta-chain V(delta)1-N1-
           D(delta)1-N2-D(delta)2-N3-J(delta)3. ).
          Length = 157

 Score = 33.5 bits (73), Expect = 1.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 697 KMKIFSLRIIQSEDQSASCFCIVPEAPNLWNVHLVILGK 581
           K    ++  +Q ED SA  FC + EAP+ W  H +I GK
Sbjct: 92  KSVALTISALQLED-SAKYFCALGEAPSAWGKHKLIFGK 129


>BC027624-1|AAH27624.1|  519|Homo sapiens Bardet-Biedl syndrome 4
           protein.
          Length = 519

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 637 CIVPEAPNLW-NVHLVILGKTSIIGSVRC 554
           C VPE+P LW N+ +   GK   + ++ C
Sbjct: 264 CAVPESPPLWNNIGMCFFGKKKYVAAISC 292


>BC008923-1|AAH08923.2|  461|Homo sapiens BBS4 protein protein.
          Length = 461

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 637 CIVPEAPNLW-NVHLVILGKTSIIGSVRC 554
           C VPE+P LW N+ +   GK   + ++ C
Sbjct: 206 CAVPESPPLWNNIGMCFFGKKKYVAAISC 234


>AY457143-1|AAS13441.1|  527|Homo sapiens Bardet-Biedl syndrome 4
           splice variant 1 protein.
          Length = 527

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 637 CIVPEAPNLW-NVHLVILGKTSIIGSVRC 554
           C VPE+P LW N+ +   GK   + ++ C
Sbjct: 272 CAVPESPPLWNNIGMCFFGKKKYVAAISC 300


>AK075321-1|BAC11547.1|  519|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90840 fis, clone Y79AA1002334, weakly similar to
           GLUCOSE REPRESSION MEDIATOR PROTEIN. ).
          Length = 519

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 637 CIVPEAPNLW-NVHLVILGKTSIIGSVRC 554
           C VPE+P LW N+ +   GK   + ++ C
Sbjct: 264 CAVPESPPLWNNIGMCFFGKKKYVAAISC 292


>AF359281-1|AAK58868.1|  519|Homo sapiens Bardet-Biedl syndrome type
           4 protein.
          Length = 519

 Score = 30.7 bits (66), Expect = 7.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 637 CIVPEAPNLW-NVHLVILGKTSIIGSVRC 554
           C VPE+P LW N+ +   GK   + ++ C
Sbjct: 264 CAVPESPPLWNNIGMCFFGKKKYVAAISC 292


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,717,106
Number of Sequences: 237096
Number of extensions: 3166251
Number of successful extensions: 6748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6747
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)