Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31005
         (857 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22090.1 68414.m02762 expressed protein contains Pfam profile...    31   0.98 
At3g28210.1 68416.m03524 zinc finger (AN1-like) family protein c...    29   3.0  
At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ...    29   5.2  
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu...    28   6.9  
At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    28   6.9  
At3g55070.1 68416.m06116 expressed protein                             28   9.1  
At3g07870.1 68416.m00962 F-box family protein contains F-box dom...    28   9.1  
At3g07720.1 68416.m00931 kelch repeat-containing protein similar...    28   9.1  

>At1g22090.1 68414.m02762 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 329

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 744 TGKLRLRNGYWPSTRETYTPKERF 815
           TG LRLR  YW   R   TP+E +
Sbjct: 260 TGLLRLRGDYWSGERSVITPEEEY 283


>At3g28210.1 68416.m03524 zinc finger (AN1-like) family protein
           contains Pfam profile: PF01428 AN1-like zinc finger
          Length = 186

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 837 FGCSRTREIFLLE---YKSHECLANNHYAAEVSQCQS 736
           F C   + +F LE   YKSH C  ++H +  VS C++
Sbjct: 29  FTCDGCKLVFCLEHRSYKSHNCPKSDHGSRTVSICET 65


>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 16  CCILVTANNLIGEPIAC---ISDGANPGHVINTF 108
           CC L  A N+IGE ++C   I +  N  HV+N++
Sbjct: 344 CCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSY 377


>At4g38180.1 68417.m05390 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family and PF04434:
           SWIM zinc finger
          Length = 788

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 351 KNNRQNRL---VQYLLDTLHMHNTYSFGYFFCEVLNFANVVGNIFFLDTFLGRRILTYGT 521
           +NNRQ  +   +Q LLD L   N  +  +F+    +    VGN+F+ D         +G 
Sbjct: 239 RNNRQKSIEGEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIMDFTHFG- 297

Query: 522 DVVRFSNMNQEQR 560
           D V F    +  R
Sbjct: 298 DTVTFDTTYRSNR 310


>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 64  CISDGANPGHVINTFCWITYTFTMPNTTSKTAAHPGLGDDNDEKRIHSYYQWVP 225
           C+   ++PG   N   ++ Y F + + T+KT       DDN  +++   Y W P
Sbjct: 328 CVPASSSPGLKPNCIYFVGYNFGVYDLTTKTCTMFLTKDDNPLRKLEFPY-WPP 380


>At3g55070.1 68416.m06116 expressed protein
          Length = 418

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 514 TAPT*SDSPI*IKSNEQIQ*SKFSRELLNVHSISSVPLERYKNTTRFGPR 663
           +A T + SP+ + S+   Q   F+  L   H +  VP E YK T R   R
Sbjct: 18  SAATITPSPVVVSSSRSNQ---FTESLKLEHQLLRVPFEHYKKTIRTNHR 64


>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 417

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 261 PHWIWKNWEEGKV 299
           P WIWKN E GKV
Sbjct: 343 PMWIWKNAENGKV 355


>At3g07720.1 68416.m00931 kelch repeat-containing protein similar to
           epithiospecifier (GI:16118838) [Arabidopsis thaliana];
           contains Pfam PF01344: Kelch motif (5 repeats)
          Length = 329

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 273 WKNWEEGKVRLISEGMRGTMASIADDKNNRQNRLV 377
           W+ WE+G   +   G RG  A  A  ++ +Q  LV
Sbjct: 271 WRKWEDGVGSVEHPGPRGWCAFAAGSRDGKQGLLV 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,067,623
Number of Sequences: 28952
Number of extensions: 443912
Number of successful extensions: 1157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)