Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31003
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970...    68   8e-12
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467...    29   4.8  
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    29   4.8  
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503...    28   8.3  
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    28   8.3  

>01_01_1206 -
           9702128-9702184,9702272-9702323,9702410-9702471,
           9702578-9702665,9703027-9703095,9703224-9703281,
           9703895-9703996,9704075-9704179,9704273-9704624,
           9706005-9706100,9706427-9706501,9707192-9707370,
           9707501-9707740,9707922-9708017,9708193-9708306,
           9708428-9708527
          Length = 614

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 33/91 (36%), Positives = 49/91 (53%)
 Frame = +2

Query: 233 ELRKGLWLEQEFASLDGDCFEYEDKEYVYKLCMFQKVTQKSKNGGMEVGLGNWGEWAGPE 412
           +L+     E+EF      CFE ++ +YVYK+C F+K +Q    G     LG W ++    
Sbjct: 481 KLKHDFGKEKEFYYFYDQCFESKEGKYVYKVCPFKKASQVE--GHSTTSLGRWDKF---- 534

Query: 413 NNKYSVMKYTNGIACWNGPSRTTTVNVNCDL 505
              Y VM+++NG  CWNGP R+  V + C L
Sbjct: 535 EESYRVMQFSNGDRCWNGPDRSLKVRLRCGL 565



 Score = 37.1 bits (82), Expect = 0.018
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 502 LGTKITSVTEPFRCEYKMELSTPAACDDSSTSQ 600
           L  ++  V EP RCEY   LSTPA CD+    +
Sbjct: 565 LNNELNGVDEPSRCEYVAVLSTPALCDEQKLKE 597



 Score = 32.7 bits (71), Expect = 0.39
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  TVSEQSKSYND-ETQKIVDQASEARRQYTDAERTVREIESNIRNIKQNLEKDYG 254
           TV    +++N  +T   + +AS  R++Y DA   + +I+S I  +   L+ D+G
Sbjct: 434 TVQNVLRTFNFFKTPVDLSEASRVRKEYDDASSKLSKIQSRISTLTDKLKHDFG 487


>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
            29646843-29646899,29647007-29647094,29647304-29647374,
            29647457-29647585,29647662-29648051,29648332-29648517,
            29648612-29648692,29648787-29648879,29648966-29649086,
            29649200-29649409,29649560-29649727,29649898-29650065,
            29650144-29650311,29650453-29650620,29650738-29650905,
            29651023-29651190,29651567-29651734,29652391-29652558,
            29652645-29652812,29655720-29655887,29656069-29656236,
            29656391-29656558,29656670-29656837,29657525-29657664,
            29658033-29658221,29658243-29658315,29658379-29658452,
            29658535-29658654,29658718-29658738,29658794-29658999,
            29659094-29659271,29660066-29660126,29660232-29660341,
            29660427-29660558,29661091-29661258,29661339-29661465,
            29661794-29661831,29663321-29663422,29663505-29663562,
            29663659-29663760,29663844-29663990,29664098-29664234,
            29664313-29664462,29664561-29664720,29665820-29665878,
            29666025-29666181,29666288-29666433,29666523-29666666,
            29667242-29667376
          Length = 2344

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 123  NDETQKIVDQASEARRQYTDAERTVREIESNIRNIKQNLEK 245
            +D+T+K   +A E  +Q     R + E E NI  +++N+E+
Sbjct: 1400 HDQTKKAFSEAQEINQQLY---RKIEEAEKNIEQLRENVER 1437


>01_06_0213 +
           27580635-27581105,27581206-27581298,27581376-27581540,
           27581640-27581862,27582329-27582429,27582666-27582713,
           27583086-27583172,27583745-27583879,27583985-27584140,
           27585336-27585545,27585641-27586351,27586429-27586974,
           27587872-27588495,27588595-27588699,27590460-27590711,
           27590939-27591766
          Length = 1584

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/46 (28%), Positives = 29/46 (63%)
 Frame = +3

Query: 108 QSKSYNDETQKIVDQASEARRQYTDAERTVREIESNIRNIKQNLEK 245
           + ++Y+DE    VD+    +R++ +  +  +E+E++ R I++ LEK
Sbjct: 140 ERRAYHDEDGSRVDR----KRKHNEEAKIAKEVEAHERRIRKELEK 181


>12_01_0611 -
           5034481-5034709,5034863-5035020,5035231-5035475,
           5036686-5036983,5037644-5038482,5039763-5039823
          Length = 609

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 332 FQKVTQKSKNGGMEVGLGNWGEWAGP 409
           ++ V ++ K    +VG G WG+W  P
Sbjct: 24  WETVEKRVKKPAQQVGKGQWGQWNSP 49


>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 380  DLPPYHHSWIFVLPSGTYTVCIHILCLHIQSNH 282
            +LPP  H + +V P G+ T+ +  L + +   H
Sbjct: 949  ELPPEAHVYCYVHPQGSLTISVRKLAVKLPGEH 981


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,355,651
Number of Sequences: 37544
Number of extensions: 431907
Number of successful extensions: 1150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)