Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31003
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  31   1.6  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)                31   1.6  
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_41399| Best HMM Match : TP2 (HMM E-Value=3.2)                       29   3.7  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)                    29   6.4  
SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)                     28   8.5  

>SB_57625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1751

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 34/67 (50%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
 Frame = +2

Query: 311 YVYKLCMFQKVTQKSKNGGMEVGLG-------NWGEWAGPENNKYSVMKYTNGIACWNGP 469
           Y+YKLC F + TQ+ K+GG    +G       NWGEW G    KYS MKY++G  CWNGP
Sbjct: 2   YLYKLCPFDRATQEPKDGGASTSIGYVSSLIGNWGEWNGSPY-KYSRMKYSDGQNCWNGP 60

Query: 470 SRTTTVN 490
           +R+T VN
Sbjct: 61  NRSTQVN 67


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 120  YNDETQKIVDQASEARRQYTDAERTVREIESNIRNIK-----QNLEKDY 251
            YNDE Q ++++  E  R+Y    +TV E +S  R +K     +N+E DY
Sbjct: 938  YNDEIQTLIEEQRELVRKYESQIKTVVE-DSKTRILKLINDHENVETDY 985


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 517 TSVTEPFRCEYKMELSTPAACDDSSTSQEHTSHDEL 624
           TS T   + E K E S  A+C D+  S E  SH++L
Sbjct: 791 TSTTVKSKPEVKKESSYDASCSDNEQSSEQGSHEKL 826


>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
          Length = 503

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = +3

Query: 123 NDETQKIVDQASEARRQYTDAERTVREIESNIRNIKQNLEK 245
           + + + + +Q  E +RQ  + E+TV E+ES ++  K+++ +
Sbjct: 364 SQQVRNLQNQLEETKRQLENREKTVLELESGLKEKKEDVSR 404


>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1553

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 126  DETQKIVDQASEARRQYTDAERTVREIESNIRNIKQNLEK 245
            DE++ I +QA E++ +  + E  +      I N+++ LEK
Sbjct: 1287 DESKDISEQAEESKHRQLELESKLNAANKRISNLEERLEK 1326


>SB_41399| Best HMM Match : TP2 (HMM E-Value=3.2)
          Length = 365

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 538 RCEYKMELSTPAACDDSSTSQEHTS 612
           RC+ K+   TP+ C DS T Q  +S
Sbjct: 126 RCDIKVPRKTPSTCTDSQTEQTQSS 150


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 594 CARIITCSRSA*FHFVFTTERFSY*CDLCSKS 499
           C++  T SRS   H +  +E   Y CD+C KS
Sbjct: 625 CSKSFTTSRSMVRHMLTHSEDRPYQCDVCGKS 656


>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
          Length = 475

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 464 HSSKQFHLCIS-SQSIYCFQDLPILPNYQDLPPY-HHSWI 351
           HSS    + I+ S+ + CF D PI P  +D PP+ HHS++
Sbjct: 47  HSSVYRSIVINTSKEMMCFSDFPI-P--KDYPPFMHHSYV 83


>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
          Length = 210

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/81 (20%), Positives = 38/81 (46%)
 Frame = +3

Query: 3   EENHEELDADFEGNEEDNSXXXXXXXXXXXXTVSEQSKSYNDETQKIVDQASEARRQYTD 182
           E+++++ D D EG+EE +               +E+SKS   +T    +   E+++    
Sbjct: 46  EDDNDDDDGDIEGDEEADEPPKKKKKAESKPKSAEKSKSSKSKTPAKKETKKESKKSPKK 105

Query: 183 AERTVREIESNIRNIKQNLEK 245
           ++    +I S  +  K++ +K
Sbjct: 106 SKPVTVKITSGKKTPKKSPKK 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,271,823
Number of Sequences: 59808
Number of extensions: 535040
Number of successful extensions: 1431
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)