Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31003
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56360.1 68418.m07034 calmodulin-binding protein similar to a...    75   5e-14
At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,...    31   0.99 
At1g58210.1 68414.m06610 kinase interacting family protein simil...    29   5.3  
At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein ...    28   7.0  
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi...    28   9.2  

>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
           alpha glucosidase II beta subunit from GI:2104691 [Mus
           musculus]
          Length = 647

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 35/92 (38%), Positives = 52/92 (56%)
 Frame = +2

Query: 233 ELRKGLWLEQEFASLDGDCFEYEDKEYVYKLCMFQKVTQKSKNGGMEVGLGNWGEWAGPE 412
           +L++    E+EF S  G CFE +  +Y YK+C +++ TQ+   G  +  LG W ++    
Sbjct: 511 KLKQDFGPEKEFYSFHGRCFESKQGKYTYKVCAYKEATQEE--GYSKTRLGEWDKF---- 564

Query: 413 NNKYSVMKYTNGIACWNGPSRTTTVNVNCDLE 508
            N Y  M YTNG  CWNGP R+  V + C L+
Sbjct: 565 ENSYQFMSYTNGEKCWNGPDRSLKVKLRCGLK 596



 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 502 LGTKITSVTEPFRCEYKMELSTPAAC 579
           L  ++  V EP RCEY   LSTPA C
Sbjct: 595 LKNELMDVDEPSRCEYAAILSTPARC 620


>At2g28470.1 68415.m03460 beta-galactosidase, putative / lactase,
           putative similar to Beta-galactosidase precursor
           SP:P48980 from [Lycopersicon esculentum]
          Length = 852

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = +2

Query: 329 MFQKVTQKSKNGGMEVGLGNWGEWAG--PENNKYS 427
           M+ ++ QKSK+GG++V +  +  W+G  PE NKY+
Sbjct: 62  MWPELIQKSKDGGLDV-IETYVFWSGHEPEKNKYN 95


>At1g58210.1 68414.m06610 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) {Petunia
           integrifolia}
          Length = 1246

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +3

Query: 15  EELDADFEGNEEDNSXXXXXXXXXXXX--TVSEQSKSYNDETQKIVDQASEARRQYTDAE 188
           +EL     G EED +               + ++ ++     QK+ DQ    + Q+  A 
Sbjct: 681 DELHEHIRGLEEDKAALVSDATVMKQRITVLEDELRNVRKLFQKVEDQNKNLQNQFKVAN 740

Query: 189 RTVREIESNIRNIKQN 236
           RTV ++   I+++K +
Sbjct: 741 RTVDDLSGKIQDVKMD 756


>At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 284

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 647 YVFSAFLTFFCV*HGIFVKKL*FSLGGMLTWHYQLIYG--CFLFHFDSK 787
           Y  +  L  F V  GIF+  L  +LG +L WH  LI      + H+DSK
Sbjct: 179 YAGNVPLKTFIVSCGIFMIGLSITLGTLLCWHIYLITHNMTTIEHYDSK 227


>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 634

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 105 EQSKSYNDETQKIVDQASEA-RRQYTDAERTVREIESNIRNIK 230
           E  + Y  ET+K+ + + E   R + + ER   E+E+ + N+K
Sbjct: 293 ELDRVYKQETKKMQELSREKINRIFREKERLTNELEAKMNNLK 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,844
Number of Sequences: 28952
Number of extensions: 376327
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)