Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31001
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904     40   0.002
03_05_0156 + 21342982-21343186,21343326-21343375                       35   0.096
03_05_0059 - 20359480-20359552,20359690-20359777,20360255-203603...    35   0.096
04_04_0888 - 29098068-29098177,29098260-29098347,29099412-290994...    31   0.89 
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557...    30   2.1  

>04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904
          Length = 207

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 21/36 (58%), Positives = 23/36 (63%)
 Frame = +1

Query: 106 IGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 213
           I  AYAA V AGG MGY K+GS  SL AG I   +L
Sbjct: 106 ITLAYAALVGAGGAMGYMKSGSQKSLAAGGISALVL 141


>03_05_0156 + 21342982-21343186,21343326-21343375
          Length = 84

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = +1

Query: 118 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 213
           Y A V  GGV GY K GS  SL AG  FG  L
Sbjct: 10  YGAAVLVGGVAGYLKRGSKASLAAGGGFGGAL 41


>03_05_0059 -
           20359480-20359552,20359690-20359777,20360255-20360326,
           20361765-20361963
          Length = 143

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 118 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 213
           Y   V AGGV+GYA+ GS  SL  G   G++L
Sbjct: 10  YGFAVLAGGVLGYARRGSTASLAGGAGAGALL 41


>04_04_0888 -
           29098068-29098177,29098260-29098347,29099412-29099450,
           29099722-29099786,29099863-29100082
          Length = 173

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 297 GYRYYNSRKFMPAGLMFCLSVG 362
           G R YN+RK +P+GL+  LS+G
Sbjct: 138 GIRLYNTRKLVPSGLLLVLSLG 159


>05_02_0012 -
           5575574-5575849,5575889-5575954,5576103-5576926,
           5577333-5577405,5577936-5577983
          Length = 428

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +3

Query: 303 RYYNSRKFMPAGLMFCLSVGMFTKLLLKNVGASRMPIKS 419
           RYYN +K  P G     +V +FT++ LKN+  + +P+KS
Sbjct: 42  RYYNYQKGQPYGAG-ANNVEIFTRVPLKNMMPASVPLKS 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,190,008
Number of Sequences: 37544
Number of extensions: 377399
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)