Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31001
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)                  28   8.5  

>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
          Length = 252

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = -2

Query: 592 NSSTNLIVVKVSDLFFTYRSEQINN*KTDFNNKKLYIQPIP**KQKLLQCTYIS*V*PLF 413
           N S  +I  KVS  F   R   + N  T  + K+L  QP+   K+      ++       
Sbjct: 50  NHSIKIIPFKVSCSFSCTRRLSVYN--TKISAKRLLSQPLKKNKKTNTMSIHVPTNVEDS 107

Query: 412 IGILLAPT---FLSNSLVNIPTERQNIRPAGMNF 320
           +  L+A     F+++  VNI T+R+  RP G  F
Sbjct: 108 VKCLVASIPLCFVASEAVNIITDRETGRPRGFGF 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,702,610
Number of Sequences: 59808
Number of extensions: 444827
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)