Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31001
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    27   0.22 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   4.8  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   4.8  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   4.8  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   4.8  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   4.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   6.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   8.4  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 504 STTKNYIFNQYRNKNKNCYSVH 439
           ST+ N   NQY+N+N N Y+ H
Sbjct: 105 STSSNDPKNQYKNQNNNHYTSH 126


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 504 STTKNYIFNQYRNKNKNCYS 445
           S + NY ++ Y N N N Y+
Sbjct: 84  SLSNNYKYSNYNNYNNNNYN 103


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 504 STTKNYIFNQYRNKNKNCYS 445
           S + NY ++ Y N N N Y+
Sbjct: 84  SLSNNYKYSNYNNYNNNNYN 103


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 504 STTKNYIFNQYRNKNKNCYS 445
           S + NY ++ Y N N N Y+
Sbjct: 84  SLSNNYKYSNYNNYNNNNYN 103


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 504 STTKNYIFNQYRNKNKNCYS 445
           S + NY ++ Y N N N Y+
Sbjct: 84  SLSNNYKYSNYNNYNNNNYN 103


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 522 ITKKQISTTKNYIFNQYRNKNKNCYSVH 439
           ++ K I    NY  N Y N  K  Y+++
Sbjct: 85  LSNKTIHNNNNYNNNNYNNYKKLYYNIN 112


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 613 GTLFKIKNSSTNLIVVKV 560
           GT+F  + +  NL++VKV
Sbjct: 280 GTIFGYQGTYVNLVIVKV 297


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 522 ITKKQISTTKNYIFNQYRNKNKN 454
           ++ K I    NY  N Y N N N
Sbjct: 85  LSNKTIHNNNNYNNNNYNNYNYN 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,499
Number of Sequences: 438
Number of extensions: 5143
Number of successful extensions: 41
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)