Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31001
(860 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g33265.1 68414.m04113 expressed protein contains Pfam profile... 36 0.046
At3g43520.1 68416.m04614 expressed protein contains Pfam profile... 34 0.14
At3g57280.1 68416.m06376 expressed protein contains Pfam profile... 32 0.43
At2g26240.1 68415.m03150 expressed protein contains Pfam profile... 32 0.56
At2g38550.1 68415.m04736 expressed protein contains Pfam profile... 31 0.75
At3g20510.1 68416.m02597 expressed protein contains Pfam profile... 29 3.0
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 29 5.3
At1g50740.1 68414.m05706 expressed protein contains Pfam profile... 29 5.3
At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containi... 28 9.2
>At1g33265.1 68414.m04113 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136);
supporting cDNA gi|23198247|gb|BT000332.1|
Length = 177
Score = 35.5 bits (78), Expect = 0.046
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 103 IIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDP 246
++ Y + GG+ Y+K+GS SL G+ GS+L AY L++ P
Sbjct: 62 VVSATYGVLLLGGGLFAYSKSGSKGSLFGGLT-GSVLMASAYFLTKSP 108
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 297 GYRYYNSRKFMPAGLMFCLSVGMFT 371
G+R +SRK +PAG + LS+GM +
Sbjct: 130 GFRLASSRKPVPAGPLLLLSIGMLS 154
>At3g43520.1 68416.m04614 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 240
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +1
Query: 118 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPS 249
YA V GG+MGY K+GS SL AG + ++L Y SQ P+
Sbjct: 144 YAFLVGVGGLMGYLKSGSQKSLLAGGLSAAVL---LYVFSQLPT 184
>At3g57280.1 68416.m06376 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 226
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 109 GFAYAATVAAGGVMGYAKAGSIPSLGAGIIFG 204
G Y V +GG++G+A + ++ SL G+++G
Sbjct: 106 GIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYG 137
>At2g26240.1 68415.m03150 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 108
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 115 AYAATVAAGGVMGYAKAGSIPSLGAG 192
AYA+ + GG+MGY K GS SL AG
Sbjct: 12 AYASLLGVGGLMGYLKRGSKISLVAG 37
>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 335
Score = 31.5 bits (68), Expect = 0.75
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 106 IGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 213
+G Y + GG + + +GSIP++ G+I G L
Sbjct: 207 VGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGAL 242
>At3g20510.1 68416.m02597 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 119
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 118 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAY 228
Y + GG +GY K GSI S G G +L + Y
Sbjct: 10 YGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGY 46
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = +1
Query: 295 WDTDTTIAESSCQQV*CFVSQSECSLNYCSRTLVPAECL*RVVRLNLY 438
W+ D ++ +S + C+V S+C L + + A+ + + LN Y
Sbjct: 601 WEEDLVVSNTSMCRPFCYVCNSQCKLPSIVKVVSKADVVLYICSLNCY 648
>At1g50740.1 68414.m05706 expressed protein contains Pfam profile
PF03647: Uncharacterised protein family (UPF0136)
Length = 119
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 118 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAY 228
Y + GG +GY K GSI SL G G ++ + +
Sbjct: 10 YGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGF 46
>At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 619
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 97 LDIIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVG 222
+D +GFA + + + GY K+G + S + +I S+ GVG
Sbjct: 249 MDGLGFASRRILYSSMISGYVKSGDLDS-ASDVILCSLKGVG 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,957,229
Number of Sequences: 28952
Number of extensions: 325142
Number of successful extensions: 779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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