Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31000
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 178 9e-46
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 177 1e-45
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 101 1e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 1e-14
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 28 1.4
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.9
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 28 1.9
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 5.8
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 7.7
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 7.7
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 178 bits (433), Expect = 9e-46
Identities = 86/164 (52%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALGSLPY*WSVSPLTTARSLNWE 579
T+GKE++D VL+RIR++AD C+GLQGFL+FHSFGGGT G + + N +
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQ 172
Query: 580 FAIYPAPQVSTGRRRALQLYPHQPT--QTLEHSDCGFSWFDNES 705
F++YPAPQVST ++ Y T TL++SDC F DNE+
Sbjct: 173 FSVYPAPQVSTS---VVEPYNSVLTTHATLDNSDCTF-MVDNEA 212
Score = 90.6 bits (215), Expect = 2e-19
Identities = 46/68 (67%), Positives = 48/68 (70%), Gaps = 5/68 (7%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 241
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 242 TGAGSTYP 265
TG G P
Sbjct: 60 TGQGKFVP 67
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 177 bits (432), Expect = 1e-45
Identities = 88/164 (53%), Positives = 112/164 (68%), Gaps = 2/164 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F ++VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALGSLPY*WSVSPLTTARSLNWE 579
T+GKE+VD V D+IR++AD C+GLQGFL+FHSFGGGT G + + +
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQ 168
Query: 580 FAIYPAPQVSTGRRRALQLYPHQPT--QTLEHSDCGFSWFDNES 705
F++YPAPQVST ++ Y T TL+ +DC F DNES
Sbjct: 169 FSVYPAPQVSTS---VVEPYNSVLTTHATLDLADCTF-MVDNES 208
Score = 96.7 bits (230), Expect = 4e-21
Identities = 42/63 (66%), Positives = 46/63 (73%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 257 TYP 265
P
Sbjct: 61 YVP 63
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 101 bits (243), Expect = 1e-22
Identities = 45/89 (50%), Positives = 61/89 (68%)
Frame = +1
Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 432
++VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VL
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 433 DRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D +R+ A+ C LQGF + HS GGGT G
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSG 146
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G Q+G A W EHG+ G T + N +F+E G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 257 TYP 265
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 74.9 bits (176), Expect = 1e-14
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +1
Query: 229 FLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 402
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 403 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALG 519
+ I + ++D I + AD L+GF + HS GGT G
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSG 148
Score = 48.8 bits (111), Expect = 1e-06
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +2
Query: 80 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 244
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 564 SCRSQRRDAPSIRK*TQSRTSTEGVEDQESLQTGTLVSELADSVQN 427
S + SIR ++SR+S+ G + Q S+Q+GT ++D ++
Sbjct: 98 SSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 312 ADLINNSRFKIDEDS--TGYVLPAPVSLKKVLKESSP 208
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +1
Query: 634 LYPHQPTQTLEHSDCGFSWFD--NESHLWTF 720
L P++ +QT D G +W+ + HLW F
Sbjct: 1103 LIPYEESQTFISRDAGVTWYRIFDSPHLWAF 1133
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 345 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIW 178
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 175 WPDAHRQDHRGWRRFFQHFLQR 240
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 279 DEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 169
++D T Y+ P P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,771,412
Number of Sequences: 5004
Number of extensions: 84056
Number of successful extensions: 263
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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