Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30999
         (458 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q567D6 Cluster: Rbm39b protein; n=3; Danio rerio|Rep: R...    37   0.18 
UniRef50_Q5QP22 Cluster: RNA binding motif protein 39; n=20; Coe...    36   0.32 
UniRef50_Q14498 Cluster: RNA-binding protein 39; n=55; Euteleost...    36   0.32 
UniRef50_Q9TXV2 Cluster: Transbilayer amphipath transporters (Su...    36   0.56 
UniRef50_UPI00003561EF Cluster: PREDICTED: hypothetical protein ...    34   1.7  
UniRef50_Q1IWS7 Cluster: Death-on-curing protein; n=16; Bacteria...    32   6.8  
UniRef50_Q0IMI9 Cluster: Os12g0566800 protein; n=8; Oryza sativa...    32   6.8  
UniRef50_Q0DWN0 Cluster: Os02g0805800 protein; n=7; Magnoliophyt...    32   6.8  

>UniRef50_Q567D6 Cluster: Rbm39b protein; n=3; Danio rerio|Rep:
           Rbm39b protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 164

 Score = 37.1 bits (82), Expect = 0.18
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 88  MAEDFDVEAMLEAPYNKSDN 147
           MA+DFDVEAMLEAPY K ++
Sbjct: 1   MADDFDVEAMLEAPYRKGES 20


>UniRef50_Q5QP22 Cluster: RNA binding motif protein 39; n=20;
           Coelomata|Rep: RNA binding motif protein 39 - Homo
           sapiens (Human)
          Length = 193

 Score = 36.3 bits (80), Expect = 0.32
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 88  MAEDFDVEAMLEAPYNKSDN 147
           MA+D D+EAMLEAPY K +N
Sbjct: 1   MADDIDIEAMLEAPYKKDEN 20


>UniRef50_Q14498 Cluster: RNA-binding protein 39; n=55;
           Euteleostomi|Rep: RNA-binding protein 39 - Homo sapiens
           (Human)
          Length = 530

 Score = 36.3 bits (80), Expect = 0.32
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 88  MAEDFDVEAMLEAPYNKSDN 147
           MA+D D+EAMLEAPY K +N
Sbjct: 1   MADDIDIEAMLEAPYKKDEN 20


>UniRef50_Q9TXV2 Cluster: Transbilayer amphipath transporters
           (Subfamily iv p-type atpase) protein 2, isoform a; n=3;
           Caenorhabditis|Rep: Transbilayer amphipath transporters
           (Subfamily iv p-type atpase) protein 2, isoform a -
           Caenorhabditis elegans
          Length = 1222

 Score = 35.5 bits (78), Expect = 0.56
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 247 FFYLSIDYAFLNHLYPFLCAYLSACPIDALMRKCYPIYYMELLTL 113
           FFY +  +   N  Y F C Y +    DA++  CY +++  L  L
Sbjct: 824 FFYKNFAFTLTNFWYSFFCGYSAQTVFDAVLIACYNLFFTALPVL 868


>UniRef50_UPI00003561EF Cluster: PREDICTED: hypothetical protein
           XP_859886 isoform 4; n=1; Canis lupus familiaris|Rep:
           PREDICTED: hypothetical protein XP_859886 isoform 4 -
           Canis familiaris
          Length = 62

 Score = 33.9 bits (74), Expect = 1.7
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 88  MAEDFDVEAMLEAPYNKSD 144
           MA+D D+EAMLEAPY K +
Sbjct: 1   MADDIDIEAMLEAPYKKGE 19


>UniRef50_Q1IWS7 Cluster: Death-on-curing protein; n=16;
           Bacteria|Rep: Death-on-curing protein - Deinococcus
           geothermalis (strain DSM 11300)
          Length = 330

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +2

Query: 53  RKSSAKRIRFKKWRKILMLRQC*KLHIINRITLPHQSIDRTSTQISTKKGIKMVQEGVVD 232
           R SSAK  RF++W    +LR+    H+    TL  Q  +R + ++  +  +++V++    
Sbjct: 92  RVSSAKATRFRQW-ATTVLRE----HLTRGFTLNRQRFERNAAEL--EAALQLVRKAAAG 144

Query: 233 REIKEDQG*G 262
             +  DQG G
Sbjct: 145 EALTADQGRG 154


>UniRef50_Q0IMI9 Cluster: Os12g0566800 protein; n=8; Oryza
           sativa|Rep: Os12g0566800 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 410

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -2

Query: 250 IFFYLSIDY--AFLNH---LYPFLCAYLSACPIDALMRKCYPIY 134
           + F+L + Y   F+NH   + PF C+Y   CP+  L+    P++
Sbjct: 279 VLFWLLLFYRFGFMNHHCAVVPFFCSYACHCPMGGLLGAAVPLF 322


>UniRef50_Q0DWN0 Cluster: Os02g0805800 protein; n=7;
           Magnoliophyta|Rep: Os02g0805800 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 981

 Score = 31.9 bits (69), Expect = 6.8
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 193 CAYLSACPIDALMRKCYPIYYMELLT--LPQHQNLPPFFKSYSFCRTLSLIFRSLKLYF 23
           C  L    I+AL  K Y  YY+ +LT  LPQH + P     Y   R   L FR++++ F
Sbjct: 240 CMELMMADIEAL--KLYINYYVAILTTPLPQHYD-PEILSRYFTSRPHILAFRTIQIIF 295


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,160,327
Number of Sequences: 1657284
Number of extensions: 3264631
Number of successful extensions: 9617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9607
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)