Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30999
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    25   5.6  
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    25   7.3  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    24   9.7  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    24   9.7  

>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 226 YAFLNHLYPFLCAYLSACPIDALMRKCYPIYYMELLTLPQHQ 101
           Y+ L+HL  F  A  S CP   + R    + Y  + T  +H+
Sbjct: 299 YSILSHLLVFAYALYSLCPNSLITRLL--VQYSPIDTFAEHK 338


>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 420 FGPCRGYDVFLYLVL 376
           +G  RGYD+FL +VL
Sbjct: 28  YGVLRGYDIFLNIVL 42


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 196 LCAYLSACPIDALMRKCYPIYY 131
           LC YLS  P   LMR  YP  Y
Sbjct: 756 LC-YLSTLPTPLLMRYIYPTLY 776


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 145 YPIYYMELLTLPQHQNLPPFFKSYSFCRTLSLIFRSL 35
           +P Y +++LTL      P  F  + F + +   FRSL
Sbjct: 309 FPQYRIDMLTLRMKVKDPFSFDMFRFGQAIESTFRSL 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,766
Number of Sequences: 5004
Number of extensions: 15490
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)