Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30999
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0806 - 23336329-23336511,23336658-23336781,23336817-233368...    32   0.25 
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921...    32   0.25 

>12_02_0806 -
           23336329-23336511,23336658-23336781,23336817-23336879,
           23336880-23336992,23337212-23337302,23337397-23337461,
           23338279-23338323,23338500-23338692,23339381-23339544,
           23339645-23339836
          Length = 410

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -2

Query: 250 IFFYLSIDY--AFLNH---LYPFLCAYLSACPIDALMRKCYPIY 134
           + F+L + Y   F+NH   + PF C+Y   CP+  L+    P++
Sbjct: 279 VLFWLLLFYRFGFMNHHCAVVPFFCSYACHCPMGGLLGAAVPLF 322


>02_05_1142 -
           34391144-34391590,34391715-34391904,34392058-34392128,
           34392403-34392515,34392656-34392749,34392843-34392908,
           34393120-34393282,34393441-34393547,34393918-34394115,
           34394204-34394329,34394800-34394904,34395056-34395098,
           34395334-34395391,34395479-34395659,34395751-34395917,
           34396010-34396249,34396341-34396781,34397147-34397272,
           34397457-34397561,34397935-34398002,34398169-34398272,
           34398856-34399008,34399472-34399570,34399919-34400046,
           34400149-34400300,34400423-34400502
          Length = 1274

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 193 CAYLSACPIDALMRKCYPIYYMELLT--LPQHQNLPPFFKSYSFCRTLSLIFRSLKLYF 23
           C  L    I+AL  K Y  YY+ +LT  LPQH + P     Y   R   L FR++++ F
Sbjct: 569 CMELMMADIEAL--KLYINYYVAILTTPLPQHYD-PEILSRYFTSRPHILAFRTIQIIF 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,009,401
Number of Sequences: 37544
Number of extensions: 81077
Number of successful extensions: 220
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)