Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30999
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.69 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 187  YLSACPIDALM-RKCYPIYYMELLTLPQHQNLPP 89
            +  + P  ALM +   P Y    +++PQ Q LPP
Sbjct: 1254 FKDSSPATALMLQHAPPAYSCGTVSVPQQQQLPP 1287


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 166 DALMRKCYPIYYMELLTLPQHQNLPPFFKSYSFCRTLSLIFRSLKL 29
           DAL +     Y +EL     H + P  F  YSF   L+LIF S  L
Sbjct: 456 DALKQILSAAYNVEL-----HNSSP--FSIYSFLERLNLIFMSSSL 494


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 166 DALMRKCYPIYYMELLTLPQHQNLPPFFKSYSFCRTLSLIFRSLKL 29
           DAL +     Y +EL     H + P  F  YSF   L+LIF S  L
Sbjct: 494 DALKQILSAAYNVEL-----HNSSP--FSIYSFLERLNLIFMSSSL 532


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 241 YLSIDYAFLNHLYPFLCAYLSACPIDALM 155
           YL+ +Y + +H+  +LC   S   I   M
Sbjct: 519 YLTYEYPWWSHVLGWLCGLSSMLCIPGYM 547


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 241 YLSIDYAFLNHLYPFLCAYLSACPIDALM 155
           YL+ +Y + +H+  +LC   S   I   M
Sbjct: 572 YLTYEYPWWSHVLGWLCGLSSMLCIPGYM 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,982
Number of Sequences: 438
Number of extensions: 1008
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)