Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30998
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.95 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.9  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 699 FFSLENTFRL----HTLHIGYLIKIYIFLSATGVDTAHATGTCI 580
           FF++   F L     TLH+ +L  IY F SA  + T H    C+
Sbjct: 188 FFNMHLLFLLCLDYFTLHLLFLPCIYYFYSAFIIFTIHLLFYCV 231



 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 678 FRLHTLHIGYLIKIYIFLSATGVDTAHATGTC 583
           F + T+H+ +L+ IY F  A  + T H    C
Sbjct: 153 FIIFTVHLLFLLCIYHFFCAFIIFTMHLLFCC 184


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 305 QIFITLEAEF*VII-VNFFLHVYFFFIKNA*TRCV 204
           QIFIT E  F +++ ++FFL+ +     N   RC+
Sbjct: 131 QIFITCELFFVILLWISFFLN-FMLHCNNTTWRCL 164


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 559 TEVST*PVPNFQ*QNCFSAKLSHSSTHY 476
           +E S+ P P+   ++ FSA  S+++T Y
Sbjct: 197 SEASSSPTPSHSSESSFSAASSYTNTIY 224


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -2

Query: 742 F*GDVYSKVLMVLNFFFLGEYISITYTTYRVPYKNIYFF 626
           F G  Y+ V+   + F   E I   Y  +  PY  IY F
Sbjct: 37  FFGSFYNLVIRKEHIF---ERIRTIYNQFSTPYVGIYIF 72


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 685 LQGKKSLIPLKPSNKRHLKIPGNCKP 762
           L+ K++ I L  +  RH+  P  C+P
Sbjct: 626 LKVKENEITLLVATVRHVMAPSTCQP 651


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,654
Number of Sequences: 336
Number of extensions: 3485
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)