Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30998
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392...    29   4.4  

>07_03_1562 -
           27738369-27738568,27738767-27738962,27739079-27739230,
           27739775-27739832,27739923-27740038,27740117-27740237,
           27740348-27740635,27740817-27740987,27741091-27741741,
           27742515-27742676,27742764-27743904,27743992-27744152,
           27744239-27744564,27745678-27745825
          Length = 1296

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 268 ITQNSASNVIKICSPLRAGLCKRTLSLKKWQH 363
           I  NS  N+I  C+P  A LC+    L+K  H
Sbjct: 892 IVSNSEKNLIGYCAPFLAKLCRNLALLQKLFH 923


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,266,848
Number of Sequences: 37544
Number of extensions: 343506
Number of successful extensions: 625
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)