Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30998
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25190.1 68415.m03012 expressed protein                             29   3.7  
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    28   8.5  
At3g28650.1 68416.m03576 DC1 domain-containing protein  similar ...    28   8.5  
At1g16530.1 68414.m01979 LOB domain protein 3 / lateral organ bo...    28   8.5  

>At2g25190.1 68415.m03012 expressed protein
          Length = 240

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 120 KERAIGAGRLCI--RKRARNRSRSAPLIISHAARSSILNEK 236
           K R +G G L    +K+ RNRSRS PL+ S  + S+  N +
Sbjct: 158 KVRRVGKGELSESEKKKLRNRSRSDPLLSSSPSSSTPDNHR 198


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 577 FYTCSRCMSSIDAGCA*KNIYFYK 648
           FY CSRCM  +   C  + +  YK
Sbjct: 99  FYNCSRCMFEVCMACLKRPLLIYK 122


>At3g28650.1 68416.m03576 DC1 domain-containing protein  similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 665

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 565 ANLPFYTCSRCMSSIDAGCA*KN 633
           ANL  Y C  CM ++D GCA +N
Sbjct: 205 ANL-LYHCDMCMFNLDIGCAIRN 226


>At1g16530.1 68414.m01979 LOB domain protein 3 / lateral organ
           boundaries domain protein 3 (LBD3) identical to
           SP|Q9SA51 LOB domain protein 3 {Arabidopsis thaliana};
           identical to ASYMMETRIC LEAVES2-like protein 9
           [Arabidopsis thaliana] GI:19918989
          Length = 165

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 259 IFFCMYTFFSL-RMLERAACEI-IRGADRLRLRALFRMHSRPAPIARSFSLA*PTGSD 92
           ++ C+ T  SL R LE    ++    A+ + +R L R+H++P P   S ++  P+  D
Sbjct: 87  VYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKPPPYTAS-TVTFPSNKD 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,000,853
Number of Sequences: 28952
Number of extensions: 289897
Number of successful extensions: 601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)