Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30996
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   129   4e-31
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    31   0.29 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   1.2  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    28   1.5  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    28   2.0  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   3.5  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   3.5  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   6.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.1  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   8.1  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  129 bits (312), Expect = 4e-31
 Identities = 74/164 (45%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
 Frame = +3

Query: 255 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 434
           +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NT
Sbjct: 67  INDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNT 126

Query: 435 GLGPEKTSFFQALSIPTKISKGTIE-SSTMYTS*SPVTRLELLKPPFSTC*TSLHSS--- 602
           G+ P KTSFFQAL IPTKI++GTIE +S ++     V++   + P  +T    L+ S   
Sbjct: 127 GMEPGKTSFFQALGIPTKITRGTIEITSDVHL----VSKDAKVGPSEATLLNMLNISPFT 182

Query: 603 YGLVVKQVYDSGNYFCT*NFWDIKPEDSSVPSFQAGSLLNVAAL 734
           YG+ V  +YD GN F      D+  ED       A S++   +L
Sbjct: 183 YGMDVLTIYDQGNVFSP-EILDVSEEDLIGHLLSAASIITAISL 225



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +2

Query: 80  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIR 184
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVR 42



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 11/20 (55%), Positives = 19/20 (95%)
 Frame = +1

Query: 190 LRGSSIVLMGKNTMMRKAIK 249
           LRG++ ++MGKNTM+R+A++
Sbjct: 45  LRGTAELIMGKNTMIRRAMR 64


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 234 AQSHQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLS 410
           A  H    ++   + KL   + G VG +FT     EV     E+ VQ   AR GA+AP +
Sbjct: 76  ALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFT 134

Query: 411 VVIPA 425
            VIPA
Sbjct: 135 HVIPA 139


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 352 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLL-NHQR 519
           + +R++ R  L+    P  +S  PP TPA+ + +        ++P+  R++L NHQ+
Sbjct: 79  SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILENHQQ 135


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 244 IKDHWTTIQPSRNCCHTSRATLASC 318
           I++HW  + P R    T +ATL SC
Sbjct: 159 IEEHWQLLCPDREKVQTWQATLGSC 183


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 612 VVKQVYDSGNYFCT*NFW--DIKPEDSSVPSFQAGSLLNVAALSFGL 746
           +++Q++   N+  T  F+  D+KPE+  + S    S  NV    FGL
Sbjct: 141 IMRQIFKGLNHIHTNGFFHRDMKPENILISSNSDSSSFNVKIADFGL 187


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 254 WSLMALRIIVFFPMSTILEPR 192
           W LM + +++F  +  ILEPR
Sbjct: 169 WGLMGINVVLFVVVQLILEPR 189


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 281 FLEGWIVVQ--WSLMALRIIVFFPM 213
           F  GWI+V   W+L+A   I F+P+
Sbjct: 587 FFRGWIIVIIIWTLIAALYITFYPL 611


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 448 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 278
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 277 SRAGL 263
           S   L
Sbjct: 195 SEEEL 199


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 627  YDSGNYFCT*NFWDIKPEDSSVPSFQAGSLLNVAALSFGLFGIPNY 764
            +   N FC+ +  +  P DSS+     GS   +A L F +   P Y
Sbjct: 1184 FSKSNDFCSRSCAERYPTDSSIMREFGGSAYCLAELCFAILKSPKY 1229


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 696 LARKNPLV*--CPRNFRCKNSSQNHIPA*QQDHMKNGEMFNM-LRRVASEA 553
           +   NP++   C +NFR +N  +NH  +  + H KN    N  +++ A EA
Sbjct: 264 IVNSNPIMCMVCNKNFRSQNQLENHENS--KKHKKNLRKMNQEIKKHAKEA 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,197,686
Number of Sequences: 5004
Number of extensions: 96688
Number of successful extensions: 291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)