Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30996
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 116 2e-26
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 116 2e-26
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 116 2e-26
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 36 0.057
11_01_0355 + 2679561-2680985,2681183-2682295 32 0.53
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 32 0.53
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.92
02_01_0527 - 3833796-3834074,3834202-3834243,3834352-3834393,383... 31 1.2
11_06_0266 - 21791757-21792982,21793154-21793178 30 2.8
03_06_0432 + 33879916-33880348,33881620-33881936,33882195-338822... 29 3.7
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513 29 6.5
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 6.5
06_01_0486 - 3455030-3455770 29 6.5
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 29 6.5
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014... 28 8.6
07_03_0396 + 17672009-17672339,17672408-17673087 28 8.6
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 8.6
03_04_0243 + 19298293-19299117 28 8.6
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 28 8.6
01_01_0732 - 5698863-5700413 28 8.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 116 bits (280), Expect = 2e-26
Identities = 74/184 (40%), Positives = 104/184 (56%)
Frame = +3
Query: 264 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 443
N +L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL
Sbjct: 75 NKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLD 134
Query: 444 PEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSSYGLVVKQ 623
P +TSFFQ L+IPTKI+KGT+E T ++ + SYGLV+
Sbjct: 135 PSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITN 194
Query: 624 VYDSGNYFCT*NFWDIKPEDSSVPSFQAGSLLNVAALSFGLFGIPNYCFQAPHFHSPNGF 803
VYDSG+ F D+ ED + F +G + VA++S + P APH NG+
Sbjct: 195 VYDSGSVFSP-EVLDL-TEDDLMEKFASGVSM-VASVSLAI-SYPTIA-AAPHMFL-NGY 248
Query: 804 QRNL 815
+ L
Sbjct: 249 KNVL 252
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIR 184
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIR 45
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPF 598
KG II V ++K GDKVG+SE+ LL L I PF
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPF 186
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG SIVLMGKNT++R+ IK H
Sbjct: 48 LRGDSIVLMGKNTLIRRCIKVH 69
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 116 bits (279), Expect = 2e-26
Identities = 77/191 (40%), Positives = 106/191 (55%)
Frame = +3
Query: 243 HQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 422
H N LE L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVP 127
Query: 423 AHNTGLGPEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSS 602
NTGL P +TSFFQ L+IPTKI+KGT+E T ++ + S
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFS 187
Query: 603 YGLVVKQVYDSGNYFCT*NFWDIKPEDSSVPSFQAGSLLNVAALSFGLFGIPNYCFQAPH 782
YGLV+ VYDSG+ F D+ ED + F +G + VA++S + P APH
Sbjct: 188 YGLVITNVYDSGSVFSP-EVLDLTEED-LMEKFASGVSM-VASVSLAI-SYPTIA-AAPH 242
Query: 783 FHSPNGFQRNL 815
NG++ L
Sbjct: 243 MFL-NGYKNVL 252
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIR 184
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIR 45
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPF 598
KG II V ++K GDKVG+SE+ LL L I PF
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPF 186
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG SIVLMGKNT++R+ IK H
Sbjct: 48 LRGDSIVLMGKNTLIRRCIKVH 69
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 116 bits (279), Expect = 2e-26
Identities = 77/191 (40%), Positives = 106/191 (55%)
Frame = +3
Query: 243 HQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP 422
H N LE L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+ VV+P
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVP 127
Query: 423 AHNTGLGPEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSS 602
NTGL P +TSFFQ L+IPTKI+KGT+E T ++ + S
Sbjct: 128 PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFS 187
Query: 603 YGLVVKQVYDSGNYFCT*NFWDIKPEDSSVPSFQAGSLLNVAALSFGLFGIPNYCFQAPH 782
YGLV+ VYDSG+ F D+ ED + F +G + VA++S + P APH
Sbjct: 188 YGLVITNVYDSGSVFSP-EVLDLTEED-LMEKFASGVSM-VASVSLAI-SYPTIA-AAPH 242
Query: 783 FHSPNGFQRNL 815
NG++ L
Sbjct: 243 MFL-NGYKNVL 252
Score = 45.6 bits (103), Expect = 5e-05
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +2
Query: 59 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIR 184
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIR 45
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +2
Query: 494 KGYY*IINDVHILKPGDKVGASEATLLNMLNISPF 598
KG II V ++K GDKVG+SE+ LL L I PF
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPF 186
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/22 (72%), Positives = 19/22 (86%)
Frame = +1
Query: 190 LRGSSIVLMGKNTMMRKAIKDH 255
LRG SIVLMGKNT++R+ IK H
Sbjct: 48 LRGDSIVLMGKNTLIRRCIKVH 69
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 35.5 bits (78), Expect = 0.057
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Frame = +3
Query: 249 RPLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV-- 413
R L N AL+KL LPH ++GN+GF+ + + ++ D +L++ A P + LS
Sbjct: 394 RTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARL 453
Query: 414 --VIPAHN--TGLGPEKTSFFQALSI 479
I HN G PEK S +L +
Sbjct: 454 ISFIADHNKLAGSLPEKMSNLSSLEL 479
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 32.3 bits (70), Expect = 0.53
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 244 IKDHWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVP 390
I+D W ++ HTS TL+ SP+ +S+ T+C+ + + P
Sbjct: 476 IQDLWNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMMSSKP 524
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 220 KNTMMRKAIKDHWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPL 399
K+ MM W +QP +R L S + LR+V WR+ +RLQ +P PL
Sbjct: 392 KSCMMAAVQSSSWADLQPELLGLVLTR--LPSLAD-RVRLRAVCRPWRSNARLQPLPPPL 448
Query: 400 P 402
P
Sbjct: 449 P 449
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.92
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +3
Query: 267 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 425
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>02_01_0527 -
3833796-3834074,3834202-3834243,3834352-3834393,
3834894-3835055,3835193-3835262,3836519-3836706
Length = 260
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 756 VSQIAQRKEQLHLANSQLGNLARKNPLV*CPRNFRCKNSSQNH 628
V+++ RK QL N QL NL RK ++ +F C+ ++NH
Sbjct: 133 VTKVRARKHQL--LNQQLDNLRRKEHILEDQNSFLCRMINENH 173
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/62 (35%), Positives = 26/62 (41%)
Frame = +1
Query: 217 GKNTMMRKAIKDHWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVP 396
GK T+ R+A + W I R L S LRSV WR +RL P P
Sbjct: 4 GKGTIGREAQRRSWADIPADIIGVVVGR--LPSVED-RARLRSVCQAWRAAARLHRPPPP 60
Query: 397 LP 402
LP
Sbjct: 61 LP 62
>03_06_0432 +
33879916-33880348,33881620-33881936,33882195-33882281,
33882690-33883253
Length = 466
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = -3
Query: 854 NSNPFVNQQPMAQKVSLKPIWRMEMRGLKAIVGYPK*PKGKSSYI 720
++N FV+ P K + + WR E+RG +A+ + + P G+++++
Sbjct: 409 DANLFVS--PYFTKEAWEATWRGELRGWRAVCDFTRPPPGQANWV 451
>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
Length = 404
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 316 CSPAETSLRSVTNCWRTKSRLQLVPVPLP 402
C+ +RSV + WR + +Q P PLP
Sbjct: 82 CAAGRARVRSVCSSWRNAAAIQRPPRPLP 110
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 412 SSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLNH-QRCTHL 531
S P + P +K++ +LP +++L+H +RC H+
Sbjct: 960 SQLPNLKELEINNMPRLNKIYGTLPNLVKLILSHIERCDHI 1000
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 388 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKF 492
P P P C S PP TP + R P + PS P +
Sbjct: 66 PPPSPRCPSCHPPYTPPT-PRPPPTPPYVPSPPPY 99
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 225 HYDAQSHQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAI 398
H + + Q P N +K L I VGF+F LVE + L E ++Q P G I
Sbjct: 737 HSNESTSQSPAYNAKLHQKSLEVIP--VGFIFEDDTLVEPANSLAEPQLQQPLDNGLI 792
>12_02_1091 - 26001129-26001181,26001292-26001325,26001339-26001437,
26002327-26002369,26002389-26002494,26002776-26002818,
26003526-26003579,26003831-26003911,26003997-26004119,
26004197-26004846,26004928-26005554,26005633-26005870,
26006082-26006258,26006373-26006723,26006824-26007111,
26008340-26008462,26008551-26009007,26009115-26009263,
26009466-26009489
Length = 1239
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -2
Query: 744 AQRKEQLHLANSQLGNLARKNPLV*CPRNFRCKNSS 637
A++++Q +L+N NL +K PLV CP ++ C +S
Sbjct: 922 AKKRKQKNLSNES--NL-KKKPLVLCPESYGCARAS 954
>07_03_0396 + 17672009-17672339,17672408-17673087
Length = 336
Score = 28.3 bits (60), Expect = 8.6
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Frame = +1
Query: 223 NTMMRKAIKDHWTTIQPSR------NCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQL 384
NT++ K K+ TT+QP R N H A + +PAE + +N R + L
Sbjct: 120 NTVIAKTKKEQGTTVQPIRRPMADDNSSHNPSALPPTPAPAEAN-HGRSNIARDVQKSLL 178
Query: 385 VPVPLPHCQSSFP-PTTPAS 441
VPV + P P AS
Sbjct: 179 VPVSAAKVHNQKPAPRDQAS 198
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -3
Query: 395 GTGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 267
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 418 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 275
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 137 IVGADNVGSQQMQQIRXRYVAPVSCSWEKT 226
I G + G++ QQIR + VA V+ SW T
Sbjct: 642 IAGTNECGTRAKQQIRIKVVANVTKSWALT 671
>01_01_0732 - 5698863-5700413
Length = 516
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 683 FFRAKFPSWEFAKCSCSFLWAIWDTQLLLSGPAFPFAKW 799
F RAK+ S A+ +F + ++ +GP FP + W
Sbjct: 383 FLRAKYLSLVHARMETAFFGRLEQRGIVSAGPGFPESSW 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,156,990
Number of Sequences: 37544
Number of extensions: 670246
Number of successful extensions: 1916
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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