Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30996
(880 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 137 1e-32
SB_24491| Best HMM Match : Hormone_2 (HMM E-Value=6.4) 31 1.6
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 29 3.7
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_3881| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 5.0
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 29 6.6
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 137 bits (332), Expect = 1e-32
Identities = 62/85 (72%), Positives = 74/85 (87%)
Frame = +3
Query: 255 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 434
L+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NT
Sbjct: 51 LENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNT 110
Query: 435 GLGPEKTSFFQALSIPTKISKGTIE 509
GLGPEKTSFFQAL+IPTKI++GTIE
Sbjct: 111 GLGPEKTSFFQALAIPTKIARGTIE 135
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2
Query: 107 QLLDEYPKCFIVGADNVGSQQMQQIR 184
Q LDEYPK F+VG DNVGS+QMQ IR
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIR 26
Score = 39.5 bits (88), Expect = 0.004
Identities = 23/48 (47%), Positives = 26/48 (54%)
Frame = +1
Query: 112 LGRVPKMFHRGCR*RGLATDAADPXSLRGSSIVLMGKNTMMRKAIKDH 255
L PK+F G G SLRG VLMGKNTM+RKAI+ H
Sbjct: 3 LDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGH 50
>SB_24491| Best HMM Match : Hormone_2 (HMM E-Value=6.4)
Length = 178
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 229 MMRKAIKDHWTTIQPSRN--CCHTSRATLASCSPAETSLRSVTNCWR 363
+ RKAIK++W Q N T+RA L SC ET+L + WR
Sbjct: 9 LRRKAIKEYWKVSQDLNNNDIIQTTRAKLYSC---ETTLIRLFEDWR 52
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 319 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ 495
S + TS ++ WR K L + L SS P +TPAS+ ++ L PSL Q
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQ 618
>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 358 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS--LPKFQRVLLNHQR 519
+RT+SR+ L LP+ + PP+ TP + PLS PS K Q V L QR
Sbjct: 68 YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPSRTYGKAQTVGLEMQR 125
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 5.0
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = -2
Query: 801 THLANGNAGPESNSWVSQIAQRKEQLHLANSQLGNLARKNPLV*CPRNFRCKNSSQNHIP 622
THL+ G ES+ +I KEQLH +L R LV R + + + H+
Sbjct: 535 THLSQKGTGDESSERSERIRAMKEQLHFWQRLRHDLERARLLVELIR--KREKLKREHVK 592
Query: 621 A*QQ-DHMKNGEMFNMLRRVASEAPTLSPG 535
Q +K + +LR+ + T PG
Sbjct: 593 VKQHVVDLKLQPLNIVLRKTLDQVQTKDPG 622
>SB_3881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 675 PEDSSVPSFQAGSLLNVAALSFGLFGIPNYCFQAPHFHSPNGF 803
PE +S ++ A S++ V L L G+ N+C P P G+
Sbjct: 322 PESNS--AWSASSVIGVVGLLVSLIGLYNHCILLPKTSLPQGY 362
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 427 WAGMTTDNGAMAPGRAGAWTLFSNSL 350
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 473 KSLEERGFLWTEAGVVGGNDD*QWG 399
K+LEERG L+ +GV GG + ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184
>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 346 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 444
V +C R PVP PH ++S PT P SV
Sbjct: 2 VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,513,953
Number of Sequences: 59808
Number of extensions: 735377
Number of successful extensions: 2093
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2091
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -