Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30996
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   141   5e-34
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    34   0.15 
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       29   5.8  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    29   5.8  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    29   5.8  
U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical p...    28   7.7  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    28   7.7  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    28   7.7  
U80023-14|AAG24047.2|  334|Caenorhabditis elegans Serpentine rec...    28   7.7  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   7.7  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  141 bits (342), Expect = 5e-34
 Identities = 91/190 (47%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
 Frame = +3

Query: 255 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 434
           L  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  V +P  NT
Sbjct: 69  LGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNT 128

Query: 435 GLGPEKTSFFQALSIPTKISKGTIESSTMYTS*SPVTRLELLKPPFSTC*TSLHSSYGLV 614
           G+GPEKTSFFQAL IPTKI++GTIE            ++   +            SYGLV
Sbjct: 129 GMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLV 188

Query: 615 VKQVYDSGNYFCT*NFWDIKPEDSSVPSFQAGSLLNVAALSFGLFGIPNYCFQAPHFHS- 791
           V+QVYD G  + T    D+  E+     F +G + NVA++S  +    NY   A   HS 
Sbjct: 189 VRQVYDDGTLY-TPEVLDMTTEELR-KRFLSG-VRNVASVSLAV----NYPTLASVAHSL 241

Query: 792 PNGFQRNLLG 821
            NG Q N+LG
Sbjct: 242 ANGLQ-NMLG 250



 Score =  102 bits (245), Expect = 3e-22
 Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 1/183 (0%)
 Frame = +2

Query: 53  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRXRYVAPVSCSWEKTL* 232
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR            K   
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 233 CAKPSKTTGQQSSPRETVATHQGQRWLRVHXXXXXXXXXQTVGEQSPGS-SSSRCHCPIV 409
             K  +    ++   E +  H  +    V            + E   G+ + +    P  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 410 XXXXXXXXXXXXXENLFLPSSFHPYQNFKGYY*IINDVHILKPGDKVGASEATLLNMLNI 589
                        +  F  +   P +  +G   I+NDVH++K GDKVGASE+ LLNML +
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGV 180

Query: 590 SPF 598
           +PF
Sbjct: 181 TPF 183



 Score = 34.7 bits (76), Expect = 0.088
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = +1

Query: 187 SLRGSSIVLMGKNTMMRKAIKDH 255
           ++RG + +LMGKNTM+RKA++ H
Sbjct: 46  AMRGHAEILMGKNTMIRKALRGH 68


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +3

Query: 273 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 449
           L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P    +     
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 450 KTSFFQALSIPTKISKGTI 506
                + L +PTK+ KG I
Sbjct: 150 MEPQLRKLGLPTKLDKGVI 168


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 247 KDHWTTIQPSRNCCHTSRATLASCSPAET-SLRSVTNCWRTKSRLQLVPVPLPHCQSSFP 423
           + H+   QP+ N     R     C+P     ++S    W T S+   +P P P+  +  P
Sbjct: 287 RTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPGTLPTPAPYVSTQAP 346


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 278 LEGWIVVQWSLMALRIIVF 222
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 278 LEGWIVVQWSLMALRIIVF 222
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 278 LEGWIVVQWSLMALRIIVF 222
           + GWIV  W   AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435


>U97005-13|AAB52290.1|  868|Caenorhabditis elegans Hypothetical
           protein F19F10.11b protein.
          Length = 868

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 807 FETHLANGNAGPESNSWVSQIAQRKEQLHLANSQLGNLARK 685
           F T     + GP SNSW+++         + NS + NL +K
Sbjct: 124 FATPWPRKDPGPSSNSWLTEYRPSVPGNQIENSNIENLIKK 164


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
           protein F19F10.11a protein.
          Length = 1121

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 807 FETHLANGNAGPESNSWVSQIAQRKEQLHLANSQLGNLARK 685
           F T     + GP SNSW+++         + NS + NL +K
Sbjct: 124 FATPWPRKDPGPSSNSWLTEYRPSVPGNQIENSNIENLIKK 164


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore
           complex protein protein12 protein.
          Length = 1847

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -1

Query: 547 LVTGLQDVYIVDDSIVPFEILVGMERAWKKEVFSGPRP 434
           L+   QDVY+   S++PF++L+  +R    E+ + P P
Sbjct: 239 LLVPSQDVYLPVHSVLPFQVLIVKQRG--TEIVNMPNP 274


>U80023-14|AAG24047.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein234 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 711 SLLNVAALSFGLFGIPNYCFQA-PHFHSPNGFQRNLLGHRLLVH 839
           +L+  ++++F LF +P  C     +FH  N F  NL+   L +H
Sbjct: 237 ALIVQSSVTFVLFIVPVQCIVTFVYFHHQNQFHNNLIFFALAIH 280


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 8   LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 121
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 415 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 305
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 304 TLASCSPAETSLRSVTNCWRTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 477
           T+ S  P      ++     T+S + L + VP  P   + FPP TP   +  P ++ L  
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510

Query: 478 SLPKFQRV 501
            L  F ++
Sbjct: 511 LLQNFLKL 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,065,522
Number of Sequences: 27780
Number of extensions: 537359
Number of successful extensions: 1731
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1724
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)