Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30995
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0846 - 21983581-21986055                                         31   1.6  
02_05_0607 - 30315982-30316215,30316688-30316831,30316902-303169...    30   2.7  
02_04_0358 - 22346745-22346804,22347268-22347273,22347439-223475...    30   2.7  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    29   4.7  
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507...    28   8.3  

>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -1

Query: 270 SVRFDRSLGVVESSSPNLSPTATVILLGVSGNPIGLDPAKEGR*HSTSVDEVSNITTA 97
           ++    ++    S  P   PT   + +G  GN + LD +K  +  ST+V   SN T A
Sbjct: 69  NIPLQTTVWTANSDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVA 126


>02_05_0607 -
           30315982-30316215,30316688-30316831,30316902-30316989,
           30317829-30317934,30318398-30318552,30318630-30318699,
           30319940-30320106,30320827-30320894,30322764-30322867,
           30322937-30323107,30323113-30323238,30323496-30323663,
           30323725-30323908,30324139-30324534
          Length = 726

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 270 SVRFDRSLGVVESSSPNLSPTATVILLGVSGNPIGLDPAKEG 145
           ++  DR + +VE S P  SPT   IL G+  + +G+D A +G
Sbjct: 643 NIPHDRKVQLVEISKP--SPTLPEILSGIGSSLLGVDRAVKG 682


>02_04_0358 -
           22346745-22346804,22347268-22347273,22347439-22347527,
           22347543-22347672,22347994-22348110,22348232-22348456,
           22348549-22348761
          Length = 279

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 622 AVTILSAPGLFATVLVGLTLVSSESNLSPIAALALL 515
           A+ + S   L   +LVGL   +S+ NLSP+  L LL
Sbjct: 244 AIMVGSTSMLMGMILVGLCRENSKENLSPVVDLGLL 279


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 176 FPDTPNRITVAVG-DRFGDDDSTTPRL 253
           F D P R T+A     FG DDS+ PRL
Sbjct: 661 FSDNPRRQTIAAAASLFGADDSSNPRL 687


>10_08_0971 -
           21949721-21949936,21950051-21950484,21950599-21950791,
           21950909-21951007,21951114-21951191,21951275-21951669,
           21954317-21954482,21954840-21954927,21955015-21955127,
           21955242-21955426,21955840-21955987,21956071-21956349,
           21956425-21956529,21956892-21957137,21957367-21957408,
           21957539-21957613
          Length = 953

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 567 VKPTSTVANKPGAESMVTAEPYSLQWFVNHYS 662
           +KP  T  N P A S +  EPY L W  ++ S
Sbjct: 598 MKPKDTNVNGP-ASSSIKVEPYKLSWMQDYAS 628


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,543,480
Number of Sequences: 37544
Number of extensions: 461252
Number of successful extensions: 1094
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)