Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30995
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   4.2  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    29   4.2  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.2  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   4.2  
Y14065-2|CAA74393.1|  497|Caenorhabditis elegans catalase 1 prot...    29   5.6  
X82175-1|CAA57665.1|  500|Caenorhabditis elegans catalase protein.     29   5.6  
AL034488-15|CAA22451.1|  500|Caenorhabditis elegans Hypothetical...    29   5.6  
Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical p...    28   7.4  
U00064-6|AAB52703.1|  213|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical pr...    28   9.8  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    28   9.8  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    28   9.8  

>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = +3

Query: 249 DFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA*RIHRSHHAQSKR 428
           +F R ERRL   R   +    Q      QL  L    E    SR    R+ R H A SK 
Sbjct: 292 EFCRDERRLVAVR--RKIVADQENAQTDQLNMLIENWETKFESRENDSRVVREHTASSKL 349

Query: 429 CYRPSKLKRSVVSI 470
           C   +K +R++ +I
Sbjct: 350 CRFFNKRQRTIAAI 363


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 552  SDDTNVKPTSTVANKPGAESMVTAEPYSLQWFVNHYSTTTT 674
            SDD N+  T+T A KP  +S V   P   +      +TTTT
Sbjct: 3238 SDDENISTTTTAAPKPTDDSDVAVLPIDEEEESTTTTTTTT 3278


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 552  SDDTNVKPTSTVANKPGAESMVTAEPYSLQWFVNHYSTTTT 674
            SDD N+  T+T A KP  +S V   P   +      +TTTT
Sbjct: 3238 SDDENISTTTTAAPKPTDDSDVAVLPIDEEEESTTTTTTTT 3278


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 552  SDDTNVKPTSTVANKPGAESMVTAEPYSLQWFVNHYSTTTT 674
            SDD N+  T+T A KP  +S V   P   +      +TTTT
Sbjct: 1052 SDDENISTTTTAAPKPTDDSDVAVLPIDEEEESTTTTTTTT 1092


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 552  SDDTNVKPTSTVANKPGAESMVTAEPYSLQWFVNHYSTTTT 674
            SDD N+  T+T A KP  +S V   P   +      +TTTT
Sbjct: 3238 SDDENISTTTTAAPKPTDDSDVAVLPIDEEEESTTTTTTTT 3278


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 552  SDDTNVKPTSTVANKPGAESMVTAEPYSLQWFVNHYSTTTT 674
            SDD N+  T+T A KP  +S V   P   +      +TTTT
Sbjct: 3238 SDDENISTTTTAAPKPTDDSDVAVLPIDEEEESTTTTTTTT 3278


>Y14065-2|CAA74393.1|  497|Caenorhabditis elegans catalase 1
           protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 268 GDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 405
           G+ +L+   + +   + P  F N+  +   ++NPQTH++ PN   D
Sbjct: 137 GNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180


>X82175-1|CAA57665.1|  500|Caenorhabditis elegans catalase protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 268 GDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 405
           G+ +L+   + +   + P  F N+  +   ++NPQTH++ PN   D
Sbjct: 137 GNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180


>AL034488-15|CAA22451.1|  500|Caenorhabditis elegans Hypothetical
           protein Y54G11A.5 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 268 GDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPNGFID 405
           G+ +L+   + +   + P  F N+  +   ++NPQTH++ PN   D
Sbjct: 137 GNWDLVGNNTPIFFIRDPIHFPNF--IHTQKRNPQTHLKDPNMIFD 180


>Z37092-12|CAA85463.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -1

Query: 342 LPVDEPEGLLVDRQLAQSIDQL*VSVRFDRSLGV-VESSSPNLSPTATVILLGVSGNPIG 166
           L VD P    ++R ++Q +  +  S+RFD +L V +     NL P   +     S  P  
Sbjct: 215 LDVDRPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLASYTP-- 272

Query: 165 LDPAKEGR*HSTSVDEVSN 109
           L  A++    + SV++++N
Sbjct: 273 LISAEKAYHEALSVNDITN 291


>U00064-6|AAB52703.1|  213|Caenorhabditis elegans Hypothetical
           protein ZC155.2 protein.
          Length = 213

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 179 PDTPNRITVAVGD-RFGDDDSTTPRL 253
           P+ PNR+T+  GD R   DD+ T R+
Sbjct: 15  PNVPNRVTIPDGDLRRNSDDTATDRI 40


>AL023832-2|CAA19476.1|  448|Caenorhabditis elegans Hypothetical
           protein F44F4.11 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -1

Query: 342 LPVDEPEGLLVDRQLAQSIDQL*VSVRFDRSLGV-VESSSPNLSPTATVILLGVSGNPIG 166
           L VD P    ++R ++Q +  +  S+RFD +L V +     NL P   +     S  P  
Sbjct: 215 LDVDRPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLASYTP-- 272

Query: 165 LDPAKEGR*HSTSVDEVSN 109
           L  A++    + SV++++N
Sbjct: 273 LISAEKAYHEALSVNDITN 291


>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 655 IIQRQQQKLDAKTSR*IYLFVF-IPNSRKLLYFLKTNPENYDAQR 786
           I+ + + ++  + +R IY F+F IP    +LY +K  PE+ DA +
Sbjct: 136 ILVQNKFRITRQKTRVIYYFLFLIPWMSSILYVVKFIPEDQDAAK 180


>AC024835-3|AAK68538.2|  405|Caenorhabditis elegans Hypothetical
           protein Y57E12B.4 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 552 SDDTNVKPTSTVANKPGAESMV-TAEPYSLQWFVNHYSTTTTKT 680
           SD T    T T        SM+ T  P ++ W +N Y TT TKT
Sbjct: 45  SDPTPAGSTETTTKSGNGVSMIFTLIPVAI-WLLNSYFTTFTKT 87


>Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical
           protein F38A6.1c protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 208 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 74
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 194 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 236


>Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical
           protein F38A6.1b protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 208 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 74
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 225 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 267


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 208 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 74
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 289 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 331


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 208 SYGDS-VRCIRESNRP*SGEGGSLTQHQCR*GQQYNNGCYVLRNHR 74
           S+ D  V+  R  ++P  G   +L +H C  G  + NGCY+ R  R
Sbjct: 289 SFNDCFVKVARSPDKPGKGSFWTLHEH-C--GNMFENGCYLRRQKR 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,329,412
Number of Sequences: 27780
Number of extensions: 407168
Number of successful extensions: 1054
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)