Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30995
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.68 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.89 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.3  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.68
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 538 ETDLILTTPMLNQRAPLQTNPARKVWSRLNPTASNG 645
           + D+I +TP+ N    L  +P ++ W R     S+G
Sbjct: 216 DEDIICSTPIGNLSHALLKDPVKEFWERRTLQISDG 251


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 538 ETDLILTTPMLNQRAPLQTNPARKVWSRLNPTASNG 645
           + D+I +TP+ N    L  +P ++ W R     S+G
Sbjct: 163 DEDVICSTPIGNLSHALLKDPVKEFWERRTLQISDG 198


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 210 SETDLAMTTQQRQDFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA 389
           SET L   TQ+ +   R E  ++ +R  E    ++  +L ++   LR A+E+  + R+++
Sbjct: 23  SETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYE---LRRAREKKLSKRSKS 79


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 210 SETDLAMTTQQRQDFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA 389
           SET L   TQ+ +   R E  ++ +R  E    ++  +L ++   LR A+E+  + R+++
Sbjct: 23  SETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYE---LRRAREKKLSKRSKS 79


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 210 SETDLAMTTQQRQDFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA 389
           SET L   TQ+ +   R E  ++ +R  E    ++  +L ++   LR A+E+  + R+++
Sbjct: 23  SETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYE---LRRAREKKLSKRSKS 79


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 210 SETDLAMTTQQRQDFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA 389
           SET L   TQ+ +   R E  ++ +R  E    ++  +L ++   LR A+E+  + R+++
Sbjct: 23  SETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYE---LRRAREKKLSKRSKS 79


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 210 SETDLAMTTQQRQDFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA 389
           SET L   TQ+ +   R E  ++ +R  E    ++  +L ++   LR A+E+  + R+++
Sbjct: 23  SETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYE---LRRAREKKLSKRSKS 79


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 210 SETDLAMTTQQRQDFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA 389
           SET L   TQ+ +   R E  ++ +R  E    ++  +L ++   LR A+E+  + R+++
Sbjct: 23  SETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYE---LRRAREKKLSKRSKS 79


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 210 SETDLAMTTQQRQDFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA 389
           SET L   TQ+ +   R E  ++ +R  E    ++  +L ++   LR A+E+  + R+++
Sbjct: 23  SETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYE---LRRAREKKLSKRSKS 79


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +3

Query: 210 SETDLAMTTQQRQDFDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEEPTNSRAEA 389
           SET L   TQ+ +   R E  ++ +R  E    ++  +L ++   LR A+E+  + R+++
Sbjct: 23  SETGLRSRTQEERLRRRREWMIQQEREREHERLKKKMILEYE---LRRAREKKLSKRSKS 79


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 346 LEAHRKNPQTHVQRP 390
           L  H ++PQTHV  P
Sbjct: 325 LNVHFRSPQTHVMAP 339


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 216 SPTATVILLGVSGNPIGLDP 157
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 216 SPTATVILLGVSGNPIGLDP 157
           +P ATV L+GV GN   L P
Sbjct: 296 TPYATVALIGVYGNRELLTP 315


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 237 QQRQDFDRSERRLRVD 284
           QQRQ   + ERRLR D
Sbjct: 170 QQRQQQRQEERRLRPD 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,646
Number of Sequences: 438
Number of extensions: 4849
Number of successful extensions: 18
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)