Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30995
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family pr...    29   5.2  
At4g01550.1 68417.m00201 no apical meristem (NAM) family protein...    28   9.1  
At3g47550.6 68416.m05176 zinc finger (C3HC4-type RING finger) fa...    28   9.1  
At3g47550.5 68416.m05174 zinc finger (C3HC4-type RING finger) fa...    28   9.1  
At3g47550.4 68416.m05172 zinc finger (C3HC4-type RING finger) fa...    28   9.1  
At3g47550.3 68416.m05175 zinc finger (C3HC4-type RING finger) fa...    28   9.1  
At3g47550.2 68416.m05173 zinc finger (C3HC4-type RING finger) fa...    28   9.1  
At3g47550.1 68416.m05171 zinc finger (C3HC4-type RING finger) fa...    28   9.1  

>At5g40140.1 68418.m04871 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 550

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 252 SLGVVESSSPNLSPTATVILLGVSGNPIG-LDPAKEGR*HSTSVDEVSNITTAAT 91
           S G +ES  PNL+P    +L  +  N I  ++ A       T +DE S I+   T
Sbjct: 215 SSGEIESLEPNLTPEEEALLTKLKSNRISEIEEALISIRRITRIDESSRISLCTT 269


>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 457

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 283 IDRLSKLPVDKQPFWFINWQALEAHRKNPQ 372
           ID+ S +   ++  WFI  +A+E +R NP+
Sbjct: 390 IDKESSMVKTEKKSWFITEEAMERNRNNPR 419


>At3g47550.6 68416.m05176 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 288

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
 Frame = +3

Query: 117 PHLHWCCVSDPPSPDQGRLDSRIHLTESP*LSETD---LAMTTQQRQDFDRSERRLRVDR 287
           P+ H      PP PD+  +           L  TD   LAM   +R   +        + 
Sbjct: 117 PYQHGYTAPPPPPPDETIIHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENN 176

Query: 288 *TEQAACRQATLLVHQLASLRSAQEEPTN 374
            +  A CR A L++  L  LR A    TN
Sbjct: 177 SSGAAFCRSAALILMALLLLRDALNLTTN 205


>At3g47550.5 68416.m05174 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 249

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
 Frame = +3

Query: 117 PHLHWCCVSDPPSPDQGRLDSRIHLTESP*LSETD---LAMTTQQRQDFDRSERRLRVDR 287
           P+ H      PP PD+  +           L  TD   LAM   +R   +        + 
Sbjct: 117 PYQHGYTAPPPPPPDETIIHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENN 176

Query: 288 *TEQAACRQATLLVHQLASLRSAQEEPTN 374
            +  A CR A L++  L  LR A    TN
Sbjct: 177 SSGAAFCRSAALILMALLLLRDALNLTTN 205


>At3g47550.4 68416.m05172 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 232

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
 Frame = +3

Query: 117 PHLHWCCVSDPPSPDQGRLDSRIHLTESP*LSETD---LAMTTQQRQDFDRSERRLRVDR 287
           P+ H      PP PD+  +           L  TD   LAM   +R   +        + 
Sbjct: 117 PYQHGYTAPPPPPPDETIIHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENN 176

Query: 288 *TEQAACRQATLLVHQLASLRSAQEEPTN 374
            +  A CR A L++  L  LR A    TN
Sbjct: 177 SSGAAFCRSAALILMALLLLRDALNLTTN 205


>At3g47550.3 68416.m05175 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 288

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
 Frame = +3

Query: 117 PHLHWCCVSDPPSPDQGRLDSRIHLTESP*LSETD---LAMTTQQRQDFDRSERRLRVDR 287
           P+ H      PP PD+  +           L  TD   LAM   +R   +        + 
Sbjct: 117 PYQHGYTAPPPPPPDETIIHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENN 176

Query: 288 *TEQAACRQATLLVHQLASLRSAQEEPTN 374
            +  A CR A L++  L  LR A    TN
Sbjct: 177 SSGAAFCRSAALILMALLLLRDALNLTTN 205


>At3g47550.2 68416.m05173 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 249

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
 Frame = +3

Query: 117 PHLHWCCVSDPPSPDQGRLDSRIHLTESP*LSETD---LAMTTQQRQDFDRSERRLRVDR 287
           P+ H      PP PD+  +           L  TD   LAM   +R   +        + 
Sbjct: 117 PYQHGYTAPPPPPPDETIIHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENN 176

Query: 288 *TEQAACRQATLLVHQLASLRSAQEEPTN 374
            +  A CR A L++  L  LR A    TN
Sbjct: 177 SSGAAFCRSAALILMALLLLRDALNLTTN 205


>At3g47550.1 68416.m05171 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 232

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
 Frame = +3

Query: 117 PHLHWCCVSDPPSPDQGRLDSRIHLTESP*LSETD---LAMTTQQRQDFDRSERRLRVDR 287
           P+ H      PP PD+  +           L  TD   LAM   +R   +        + 
Sbjct: 117 PYQHGYTAPPPPPPDETIIHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENN 176

Query: 288 *TEQAACRQATLLVHQLASLRSAQEEPTN 374
            +  A CR A L++  L  LR A    TN
Sbjct: 177 SSGAAFCRSAALILMALLLLRDALNLTTN 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,322
Number of Sequences: 28952
Number of extensions: 371575
Number of successful extensions: 886
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)