Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30994
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 173 2e-44
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 169 4e-43
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 61 2e-10
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 45 1e-05
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.23
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 3.7
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 27 3.7
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 4.9
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 26 4.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 173 bits (421), Expect = 2e-44
Identities = 101/210 (48%), Positives = 127/210 (60%), Gaps = 6/210 (2%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRYPLPTGHVRASHLCREGLP*TAFRRRDHK 181
+VSSITASLRF G+LNVDL EFQTNLVPYPR P V S + AF +
Sbjct: 238 VVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPL--VTYSPIVSAA---KAFHESNSV 292
Query: 182 RMLRAR--QPDGEM---RPPSWQVHGLLYVYRGDVVPKDVNAAIATIKTKRTIQFVDWCP 346
+ + + +P +M P + + +YRGDV+P+DV AA+ +IK++RTIQFVDWCP
Sbjct: 293 QEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCP 352
Query: 347 TGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGSP*PQVRPHVRQAAFVHWX 526
TGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW + + AFVHW
Sbjct: 353 TGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 412
Query: 527 XXXXXXXXXXLRSPLGPGLPS-EKDYEEVG 613
S L + E+DYEEVG
Sbjct: 413 VGEGMEEGEF--SEAREDLAALERDYEEVG 440
Score = 114 bits (274), Expect = 1e-26
Identities = 71/181 (39%), Positives = 90/181 (49%), Gaps = 1/181 (0%)
Frame = +3
Query: 90 PGIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMCTVVT 269
P IHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+
Sbjct: 267 PRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGD 326
Query: 270 SYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP-WCPEATWPRFNVXXXXXXXX 446
PR + ++ S S + P + PP P + + N
Sbjct: 327 VIPRD-VQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNT 385
Query: 447 XXXXKLGARLDHKFDLMYAKRLSCXXXXXXXXXXXXXSEAR*DLGCPPRRITKKSGMDSA 626
+ +RLDHKFDLMY+KR SEAR DL R ++ G DS
Sbjct: 386 TSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY-EEVGQDSM 444
Query: 627 E 629
+
Sbjct: 445 D 445
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 169 bits (411), Expect = 4e-43
Identities = 99/210 (47%), Positives = 126/210 (60%), Gaps = 6/210 (2%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRYPLPTGHVRASHLCREGLP*TAFRRRDHK 181
+VSSITASLRF+G+LNVDL EFQTNLVPYPR P V + + AF +
Sbjct: 234 VVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPL--VTYAPIVSAA---KAFHESNSV 288
Query: 182 RMLRAR--QPDGEM---RPPSWQVHGLLYVYRGDVVPKDVNAAIATIKTKRTIQFVDWCP 346
+ + + +P +M P + + +YRGDV+P+DV AA+ TIK KRTIQFVDWCP
Sbjct: 289 QEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCP 348
Query: 347 TGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGSP*PQVRPHVRQAAFVHWX 526
TGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW + + AFVHW
Sbjct: 349 TGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 408
Query: 527 XXXXXXXXXXLRSPLGPGLPS-EKDYEEVG 613
S L + E+DYEEVG
Sbjct: 409 VGEGMEEGEF--SEAREDLAALERDYEEVG 436
Score = 112 bits (269), Expect = 6e-26
Identities = 70/181 (38%), Positives = 90/181 (49%), Gaps = 1/181 (0%)
Frame = +3
Query: 90 PGIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMCTVVT 269
P IHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+
Sbjct: 263 PRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGD 322
Query: 270 SYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEAT-WPRFNVXXXXXXXX 446
PR + ++ + + + P + PP E + + +
Sbjct: 323 VIPRD-VQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNT 381
Query: 447 XXXXKLGARLDHKFDLMYAKRLSCXXXXXXXXXXXXXSEAR*DLGCPPRRITKKSGMDSA 626
+ +RLDHKFDLMY+KR SEAR DL R ++ G DS
Sbjct: 382 TSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY-EEVGQDSM 440
Query: 627 E 629
E
Sbjct: 441 E 441
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 60.9 bits (141), Expect = 2e-10
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 6/180 (3%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPRYPL------PTGHVRASHLCREGLP*TAF 163
+++ +T S RF G LN DL + N+VP+PR P + +S +P
Sbjct: 232 VMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQ 291
Query: 164 RRRDHKRMLRARQPDGEMRPPSWQVHGLLYVYRGDVVPKDVNAAIATIKTKRTIQFVDWC 343
+ D M+ A P R + L +RG V K+V+ I +++TK + FV+W
Sbjct: 292 QMFDANNMMVAADP----RHGRYLTVAAL--FRGKVSMKEVDEQIRSVQTKNSAYFVEWI 345
Query: 344 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGSP*PQVRPHVRQAAFVHW 523
P + PP DL + + + N+T+I E + Q R+ AF+HW
Sbjct: 346 PDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHW 397
Score = 49.2 bits (112), Expect = 6e-07
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +3
Query: 90 PGIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYM 242
P +HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+
Sbjct: 261 PRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYL 311
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 44.8 bits (101), Expect = 1e-05
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Frame = +2
Query: 2 IVSSITASLRFDGALNVDLTEFQTNLVPYPR-YPLPTGHVRASHLCREGLP*TAFRRRD- 175
++S+ T +LR+ G +N DL +L+P PR + L T + ++ E A R+
Sbjct: 235 VMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAK--AIRKTTV 292
Query: 176 ---HKRMLRARQPDGEMRPPSWQVH-GLLYVYRGDVVPKDVNAAIATIKTKRTIQFVDWC 343
+R+L + + P +L + +G+ P DV+ ++ I+ +R F+ W
Sbjct: 293 LDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWG 352
Query: 344 PTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 457
P +V ++ + P + ++ + ML+N T+IA
Sbjct: 353 PASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIA 385
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 261 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 395
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 26.2 bits (55), Expect = 4.9
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Frame = +3
Query: 84 LTPGIHFPLVTYAPVISAEKAYHEQLSVA---EITNACFEPANQMVKCDPRHGKYMACCM 254
+TP + P APV+ + H+ + E+ +A PA +V P + A +
Sbjct: 510 ITPSV--PQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 255 CTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 398
S P+ P P PSV V P + SV P PE
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 91 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 207
P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1242 PSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 560 RSPLGPGLPSEKDYEEVGH 616
RSP+ G+P KD +E GH
Sbjct: 698 RSPVSAGVPIPKDVDEKGH 716
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 652 LGFLNLPPSAESMPDFFVILLGGQP 578
LGF ++P S E PD + LGG P
Sbjct: 12 LGFPDVPISQEDKPDEYSTFLGGFP 36
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 47 NVDLTEFQTNLVPYPRYPLPTGHVRASHLCREGLP 151
++ L QTNL P + P H SHL + +P
Sbjct: 252 SIPLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVP 286
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 124 QSSLPRRPTMNSFPSPRSQTHASSPPTR 207
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/64 (28%), Positives = 24/64 (37%)
Frame = +2
Query: 230 WQVHGLLYVYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLA 409
W+ Y + KDVN + TI +W PTG ++ Y V D
Sbjct: 141 WRHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-G 198
Query: 410 KVQR 421
VQR
Sbjct: 199 NVQR 202
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +3
Query: 297 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 383
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 294 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 389
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,558
Number of Sequences: 5004
Number of extensions: 66236
Number of successful extensions: 241
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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