Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30994
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.75 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 284 HPWVRRHHGTHTASHVLAMTGVAFHHLVGGLEACV 180
           H W+RR+       H    TG    H+VGGL   +
Sbjct: 181 HGWMRRNVLNKQHVHFHDYTGSVVIHVVGGLTGLI 215


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -2

Query: 288 FTSLGTTSPRY-TYSKPCTCHDGGRISPSGW 199
           + SLG       T++ PC CH  G+     W
Sbjct: 26  YVSLGALKMHIRTHTLPCKCHLCGKAFSRPW 56


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 346 NRFQGRYQLPA 378
           NRF G Y++PA
Sbjct: 435 NRFSGEYEIPA 445


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 307 QNQAYYPIRRLVSNRFQGRYQ 369
           Q +A+Y +R   +N FQ +YQ
Sbjct: 17  QAKAHYSLRDFKANIFQVKYQ 37


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 275 VRRHHGTHTASHVLAMTGVAFHH 207
           ++RHH      H L  T V  HH
Sbjct: 138 LQRHHHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,659
Number of Sequences: 438
Number of extensions: 4482
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)