Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30993
         (785 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q20156 Cluster: Serpentine receptor, class sx protein 2...    27   2.5  

>UniRef50_Q20156 Cluster: Serpentine receptor, class sx protein 22;
           n=1; Caenorhabditis elegans|Rep: Serpentine receptor,
           class sx protein 22 - Caenorhabditis elegans
          Length = 306

 Score = 27.1 bits (57), Expect(2) = 2.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 137 SLIIIGRLYVCEFKREVVVLHCTFV 211
           S+I++  LYVC +   ++V+ CT+V
Sbjct: 211 SMIVVISLYVCTWFLALLVIFCTYV 235



 Score = 26.6 bits (56), Expect(2) = 2.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 80  NFSIVVIMLFVYGDA 124
           NFSI V+++FVYG A
Sbjct: 171 NFSIAVVVIFVYGGA 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,758,724
Number of Sequences: 1657284
Number of extensions: 15936887
Number of successful extensions: 28109
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 27039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28100
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)