Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30993
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1249 - 32067644-32067787,32068245-32068346,32068415-320684...    28   9.7  
04_04_1066 - 30533114-30533185,30533507-30533614,30533716-305340...    28   9.7  
03_01_0579 - 4274927-4274998,4275320-4275427,4275529-4275904,427...    28   9.7  
01_01_0527 + 3867621-3867764,3867855-3868128,3868216-3868315,386...    28   9.7  

>04_04_1249 -
           32067644-32067787,32068245-32068346,32068415-32068438,
           32068439-32068543,32068625-32068729,32068885-32068966,
           32069254-32069456,32069534-32069692,32070045-32070154,
           32070264-32070405,32070544-32070690,32070773-32070847,
           32070923-32071132,32071223-32071426,32071514-32071633,
           32071743-32071852,32072033-32072177,32072266-32072499,
           32072611-32072646
          Length = 818

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 319 CHLRLASDIDYGQRIHAKATHTVN 248
           C LR AS   +G RIH+ + H +N
Sbjct: 764 CSLRFASRFCHGMRIHSPSMHPLN 787


>04_04_1066 -
           30533114-30533185,30533507-30533614,30533716-30534091,
           30534173-30534330,30534416-30534536,30534613-30534831,
           30534923-30535022,30535254-30535383,30535474-30535617
          Length = 475

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 329 ILKCESEKI*CPFKEHEYKY 388
           ILKC+ E   CP +++EYKY
Sbjct: 275 ILKCKKEN--CPCRQYEYKY 292


>03_01_0579 -
           4274927-4274998,4275320-4275427,4275529-4275904,
           4275986-4276143,4276229-4276349,4276426-4276644,
           4276736-4276835,4276923-4277196,4277287-4277430
          Length = 523

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 329 ILKCESEKI*CPFKEHEYKY 388
           ILKC+ E   CP +++EYKY
Sbjct: 323 ILKCKKEN--CPCRQYEYKY 340


>01_01_0527 +
           3867621-3867764,3867855-3868128,3868216-3868315,
           3868407-3868625,3868702-3868822,3868908-3869065,
           3869147-3869522,3869624-3869731,3870053-3870124
          Length = 523

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 329 ILKCESEKI*CPFKEHEYKY 388
           ILKC+ E   CP +++EYKY
Sbjct: 323 ILKCKKEN--CPCRQYEYKY 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,185,395
Number of Sequences: 37544
Number of extensions: 400782
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)