Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30993
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    27   0.069
Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 27.1 bits (57), Expect(2) = 0.069
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 137 SLIIIGRLYVCEFKREVVVLHCTFV 211
           S+I++  LYVC +   ++V+ CT+V
Sbjct: 211 SMIVVISLYVCTWFLALLVIFCTYV 235



 Score = 26.6 bits (56), Expect(2) = 0.069
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 80  NFSIVVIMLFVYGDA 124
           NFSI V+++FVYG A
Sbjct: 171 NFSIAVVVIFVYGGA 185


>Z70285-2|CAA94289.2|  183|Caenorhabditis elegans Hypothetical
           protein F56C4.2 protein.
          Length = 183

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 497 HQLNSSEPILISIQMSNDVISGATLTCLLYFLYLSC 390
           H + +  P+L+ I ++  V++ A + C +Y +YL C
Sbjct: 102 HPVATPTPLLLGIILTIIVVTVALILCFVYCIYLWC 137


>AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical
           protein Y52B11A.1 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 415 FCISYIYLAVLVFMFFERTLDFF*FTL 335
           FC S++ LA  +FM  + TL  F F L
Sbjct: 14  FCCSHVVLAFAIFMILDFTLTLFSFGL 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,311
Number of Sequences: 27780
Number of extensions: 404934
Number of successful extensions: 836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)