Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30993
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.80 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   5.6  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   5.6  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 555 VPKTTSSPITMYSTTTLEVPSVEFIR 478
           VP TT+SP T  STTT    S + I+
Sbjct: 379 VPTTTASPTTEPSTTTSTTISQKHIK 404


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 649 KLNCNFGIILASPIPYNHVLGILDFN*WFPF-WFNLKLK 762
           K++ NFG+     I  N    I+  N W  F W + +L+
Sbjct: 51  KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQ 89


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 169 AHVQPPNDNKAVILSRIPIDKQHNNNNAKVGGHIVS 62
           AH++   +  A ILSRIP     N N    G +  S
Sbjct: 94  AHMKKVREQMAGILSRIPEQGVVNWNKIPEGANTTS 129


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 169 AHVQPPNDNKAVILSRIPIDKQHNNNNAKVGGHIVS 62
           AH++   +  A ILSRIP     N N    G +  S
Sbjct: 94  AHMKKVREQMAGILSRIPEQGVVNWNKIPEGANTTS 129


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 169 AHVQPPNDNKAVILSRIPIDKQHNNNNAKVGGHIVS 62
           AH++   +  A ILSRIP     N N    G +  S
Sbjct: 94  AHMKKVREQMAGILSRIPEQGVVNWNKIPEGANTTS 129


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 97   NNNAKVGGHIVSLDI 53
            +NN K GG+ V LD+
Sbjct: 1510 SNNVKPGGNFVVLDL 1524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,914
Number of Sequences: 438
Number of extensions: 5463
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)