Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30992
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   4.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.5  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.5  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 391 GSVSLQFDDFVSTFHDILVKLLPVLRIVVGS 299
           GSV   FD+F + F D  +++  V  ++ G+
Sbjct: 80  GSVDFLFDNFSAAFQDHNIEITEVAPVLPGN 110


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 391 GSVSLQFDDFVSTFHDILVKLLPVLRIVVGS 299
           GSV   FD+F + F D  +++  V  ++ G+
Sbjct: 313 GSVDFLFDNFSAAFQDHNIEITEVAPVLPGN 343


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 391 GSVSLQFDDFVSTFHDILVKLLPVLRIVVGS 299
           GSV   FD+F + F D  +++  V  ++ G+
Sbjct: 313 GSVDFLFDNFSAAFQDHNIEITEVAPVLPGN 343


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 719 IKQTQFRFQTNPKPA-FLSNSDA 654
           IK+T ++ Q NP+PA F    DA
Sbjct: 127 IKKTSYQSQPNPEPADFADAPDA 149


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 719 IKQTQFRFQTNPKPA-FLSNSDA 654
           IK+T ++ Q NP+PA F    DA
Sbjct: 127 IKKTSYQSQPNPEPADFADAPDA 149


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 389 SWAIGLSLAQIVRAILTNANSVHAVSTYLKGEHGIEDEV 505
           SW I   L +      + A SV A+S  L+G+ G  DE+
Sbjct: 133 SWEIRDRLVKEGICDRSTAPSVSAISRLLRGKGGECDEI 171


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 427 PHDLSQRQSDSPGSVSLQFDDFVSTFHDILVKLLP 323
           P D  Q     P   S    D V TF  IL KLLP
Sbjct: 630 PKDFPQCGDYVPSGNSTVDCDDVGTFGAILKKLLP 664


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 438 RTLTAFMRSLLISRASTASKTKYFCRCR 521
           R  TA+  S L+       ++KY CR R
Sbjct: 87  RARTAYTSSQLVELEREFHRSKYLCRPR 114


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 438 RTLTAFMRSLLISRASTASKTKYFCRCR 521
           R  TA+  S L+       ++KY CR R
Sbjct: 107 RARTAYTSSQLVELEREFHRSKYLCRPR 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,986
Number of Sequences: 336
Number of extensions: 3331
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)