Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30992
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    81   2e-16
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    28   1.6  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    28   1.6  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    28   1.6  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.9  
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.5  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   8.5  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 10/207 (4%)
 Frame = +2

Query: 2   IIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVHRVRH*LGLGTVPLPAVGQAR 181
           I+ ++ KY+ D IL++A+NPVD+LTY T K++G P  RV      +G GT+    +  AR
Sbjct: 119 ILREVTKYTKDAILLVATNPVDVLTYATLKLTGFPAERV------IGSGTI----IDTAR 168

Query: 182 YRYHV------LPXXXXXXXXXXXXSSMVCI----NIAGVRLSDLNNQIGTDDDPENWKE 331
           ++Y +       P             S + +    +IAG+ L+D   +  T  D +   E
Sbjct: 169 FQYLIGKLYGLDPQSVNADIIGEHGDSELAVWSHASIAGLSLADFCEESETKYDEQALNE 228

Query: 332 LHENVVKSAYEVIKLKGYTSWAIGLSLAQIVRAILTNANSVHAVSTYLKGEHGIEDEVFL 511
             +    +AY++I+ KG T + +   L +I+ AI+ + N++  VS  L     I D  F 
Sbjct: 229 CFKETKNAAYDIIQRKGSTEYGVAAGLVRILAAIIRDENALLTVSG-LDSYSNIGDVCF- 286

Query: 512 SLPCVLSHCGVSDVIRQPLTELEVAQL 592
           S+P  L+  G   +I   L++ E A+L
Sbjct: 287 SMPRKLNKDGAHRIINAKLSKDEDAKL 313



 Score = 55.6 bits (128), Expect = 7e-09
 Identities = 26/54 (48%), Positives = 35/54 (64%)
 Frame = +3

Query: 90  RLAGCLSTAFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDSSVPVWS 251
           +L G  +   IGSGT +D+ARF+YL+    G+   S +  IIGEHGDS + VWS
Sbjct: 148 KLTGFPAERVIGSGTIIDTARFQYLIGKLYGLDPQSVNADIIGEHGDSELAVWS 201


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 308 DDPENWKELHENVV 349
           +DPE WKE+ ENVV
Sbjct: 246 EDPEKWKEILENVV 259


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 257 NIAGVRLSDLNNQIGTDDDPENWKELHENV 346
           NI G  LSD NNQ   DD  +  +EL +++
Sbjct: 339 NIEGFNLSDSNNQKVQDDQQQQLEELFKDL 368


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 308 DDPENWKELHENVV 349
           +DPE WKE+ ENVV
Sbjct: 246 EDPEKWKEILENVV 259


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 186  ATTSCHGYIIGEHGDSSVPVWSA*T 260
            + TSCHGY+I    D  V +W+  T
Sbjct: 1194 SVTSCHGYLIA-FNDEFVEIWNTRT 1217


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 698  FQTNPKPAFLSNSDAFRVRIKGCPATLA 615
            F T P P FL   ++F   ++ C  TLA
Sbjct: 3608 FNTIPFPLFLEKDESFDCLVRRCQLTLA 3635


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 499 VFDAVLALEISRDRMNAVSVREYSPHDLSQRQ 404
           +F  V  L + R   N +S R+Y+PH  S R+
Sbjct: 84  LFFFVSLLHLYRRPRNQISTRKYTPHTQSGRR 115


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 100 PANLPRNIRQNIHGVTGDHQYCVR 29
           P  LPR ++  +HG  GD  Y  R
Sbjct: 56  PLELPRKLKVYLHGPPGDGIYVAR 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,516
Number of Sequences: 5004
Number of extensions: 57722
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)