Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30992
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0042 + 295608-296222,298479-298925 122 4e-28
06_01_0033 - 346273-347355 98 6e-21
08_01_0567 - 5040389-5040631,5042124-5042264 30 2.2
12_02_0736 + 22650641-22650689,22650827-22650975,22651783-226518... 29 2.9
12_02_0266 - 16582912-16584918,16585041-16585229 29 2.9
10_08_0753 + 20324011-20324113,20324210-20324231,20324344-203244... 29 2.9
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 29 3.9
07_03_1721 - 29023979-29025295 29 5.1
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 122 bits (293), Expect = 4e-28
Identities = 81/217 (37%), Positives = 111/217 (51%), Gaps = 12/217 (5%)
Frame = +2
Query: 2 IIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVHRVRH*LGLGTVPLPAVGQAR 181
I+P L ++SP+ +L+I SNPVD+LTYV WK+SG P RV +G GT + +R
Sbjct: 139 IVPALAEHSPEALLLIVSNPVDVLTYVAWKLSGFPASRV------IGSGT----NLDSSR 188
Query: 182 YRY------HVLPXXXXXXXXXXXXSSMVCI----NIAGVRLSDLNNQIGTDDDPENWKE 331
+R+ V S V I ++AG+ + + D E +
Sbjct: 189 FRFLLAEHLQVNAQDVQAYMVGEHGDSSVAIWSSMSVAGMPVLKSLRESHQSFDEEALEG 248
Query: 332 LHENVVKSAYEVIKLKGYTSWAIGLSLAQIVRAILTNANSVHAVSTYLKGEHGI--EDEV 505
+ VV SAYEVI LKGYTSWAIG S+A + ++L + + +H VS G HGI + EV
Sbjct: 249 IRRAVVDSAYEVISLKGYTSWAIGYSVASLAASLLRDQHRIHPVSVLASGFHGIPQDHEV 308
Query: 506 FLSLPCVLSHCGVSDVIRQPLTELEVAQLSGNLLKSW 616
FLSLP L GV V LTE E +L + W
Sbjct: 309 FLSLPARLGRAGVLGVAEMELTEEEARRLRRSAKTLW 345
Score = 67.3 bits (157), Expect = 1e-11
Identities = 28/55 (50%), Positives = 41/55 (74%)
Frame = +3
Query: 90 RLAGCLSTAFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDSSVPVWSA 254
+L+G ++ IGSGTNLDS+RFR+LL++ L + Y++GEHGDSSV +WS+
Sbjct: 168 KLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDSSVAIWSS 222
>06_01_0033 - 346273-347355
Length = 360
Score = 98.3 bits (234), Expect = 6e-21
Identities = 79/217 (36%), Positives = 110/217 (50%), Gaps = 20/217 (9%)
Frame = +2
Query: 2 IIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVHRVRH*LGLGTVPLPAVGQAR 181
I+P + SP+++LVI SNPVD+LTYV WK+SG P RV +G GT + +R
Sbjct: 138 IVPAAAEASPESVLVIVSNPVDVLTYVAWKLSGFPASRV------IGSGT----NLDSSR 187
Query: 182 YRY------HVLPXXXXXXXXXXXXSSMVC----INIAGVR-LSDLNNQIGTDDDPENWK 328
+R+ V S V I++ G+ L+ L + + +
Sbjct: 188 FRFLLAEHLEVSAQDVQAYMVGEHGDSSVALWSSISVGGMPVLAHLQKNHRSAATAKKFD 247
Query: 329 E-----LHENVVKSAYEVIKLKGYTSWAIGLSLAQIVRAILTNANSVHAVSTYLKG-EHG 490
E + VV SAYEVIKLKGYTSWAIG S+A I ++L + +H VS KG G
Sbjct: 248 EAALEGIRRAVVGSAYEVIKLKGYTSWAIGYSVASIAWSLLRDQRRIHPVSVLAKGLVRG 307
Query: 491 I--EDEVFLSLPCVLSHCGVSDVIRQ-PLTELEVAQL 592
+ + E+FLSLP L GV V + LT+ E +L
Sbjct: 308 VPADRELFLSLPARLGRAGVLGVAAELVLTDEEERRL 344
Score = 67.7 bits (158), Expect = 9e-12
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = +3
Query: 90 RLAGCLSTAFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDSSVPVWSA 254
+L+G ++ IGSGTNLDS+RFR+LL++ L ++ Y++GEHGDSSV +WS+
Sbjct: 167 KLSGFPASRVIGSGTNLDSSRFRFLLAEHLEVSAQDVQAYMVGEHGDSSVALWSS 221
>08_01_0567 - 5040389-5040631,5042124-5042264
Length = 127
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +2
Query: 2 IIPQLIKYSPDTILVIASNPV--DILTYV 82
I+P L + SP+ LV+ S+P D+LTYV
Sbjct: 20 IVPALAENSPEAALVVVSDPPVDDVLTYV 48
>12_02_0736 +
22650641-22650689,22650827-22650975,22651783-22651839,
22653534-22653611,22654688-22654953,22655249-22655351
Length = 233
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 424 HDLSQRQSDSPGSV-SLQFDDFVSTFHDILVKLLPVLRIVVGSDLIVEITEAYSRY 260
H + Q+++ V L + F+S FH ++K+ P+ VG DL+ IT + +
Sbjct: 54 HIEDEHQAENRAGVYKLIHEVFLSCFHYRVLKVCPICYDAVGMDLVSHITSEHPSF 109
>12_02_0266 - 16582912-16584918,16585041-16585229
Length = 731
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/80 (25%), Positives = 38/80 (47%)
Frame = +2
Query: 437 TNANSVHAVSTYLKGEHGIEDEVFLSLPCVLSHCGVSDVIRQPLTELEVAQLSGNLLKSW 616
T++ S+ Y + E E + + +L CG + + L +Q N L +W
Sbjct: 129 TDSRSLFFRRLYGSDNYIPEPEELVIVVDILRKCGGVPLAIDVIASLLASQREVNKLDNW 188
Query: 617 LKLRDNL*F*REMHLSSKGM 676
LK+++++ F E + +SK M
Sbjct: 189 LKIKNSMGFELETNPNSKWM 208
>10_08_0753 +
20324011-20324113,20324210-20324231,20324344-20324400,
20324704-20324785,20324903-20324998,20325265-20325389,
20325484-20325502,20325598-20325744
Length = 216
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 102 CLST-AFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIG 218
CL+T F G ++ S RF LL D I TT C IIG
Sbjct: 84 CLATEVFCCFGNSVASTRF--LLQDEFNIQTTQCDNCIIG 121
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 403 SDSPGSVSLQFDDFVSTFHDILVKLLPVLRIVVGSDLIVEITE 275
+D G S+ FD+FV + HD +LL L I + +I +I +
Sbjct: 376 ADVLGLSSVTFDEFVQSLHDYDSRLLGELHIALLKSIIKDIED 418
>07_03_1721 - 29023979-29025295
Length = 438
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 74 SEYPRGYWRSPILCPDCTLSAA 9
S +P G W SP + P+C++SA+
Sbjct: 312 SPWPNGAWSSPWIQPNCSVSAS 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,686,445
Number of Sequences: 37544
Number of extensions: 400535
Number of successful extensions: 1064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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