Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30992
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical pr... 188 5e-48
U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate dehydro... 188 5e-48
L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate dehyd... 188 5e-48
Z82262-5|CAE17771.1| 679|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF063007-1|AAC16430.2| 730|Caenorhabditis elegans Hypothetical ... 29 4.5
Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical p... 28 6.0
Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical pr... 28 6.0
>Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical
protein F13D12.2 protein.
Length = 333
Score = 188 bits (457), Expect = 5e-48
Identities = 103/223 (46%), Positives = 145/223 (65%), Gaps = 11/223 (4%)
Frame = +2
Query: 2 IIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVHRVRH*LGLGTVPLPAVGQAR 181
IIPQL+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV G GT + AR
Sbjct: 120 IIPQLVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERV------FGSGT----NLDSAR 169
Query: 182 YRY------HVLPXXXXXXXXXXXXSSMVC----INIAGVRLSDLNNQIGTDDDPENWK- 328
+R+ ++ P S V +N+AGV L ++ IG D E+W+
Sbjct: 170 FRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWSGVNVAGVTLHEIKPDIGEKTDNEHWEA 229
Query: 329 ELHENVVKSAYEVIKLKGYTSWAIGLSLAQIVRAILTNANSVHAVSTYLKGEHGIEDEVF 508
E+H+ VV SAYE+IKLKGYTSWAIGLS+A+I + I +N+ +V A+ST +KG HGI D+V+
Sbjct: 230 EIHKKVVDSAYEIIKLKGYTSWAIGLSVAKIAQGIFSNSRNVFALSTNVKGFHGINDDVY 289
Query: 509 LSLPCVLSHCGVSDVIRQPLTELEVAQLSGNLLKSWLKLRDNL 637
LSLP VL G++ V++Q LTE EV +L N K+ L++++ +
Sbjct: 290 LSLPVVLGSAGLTHVVKQQLTEAEVQKLH-NSAKALLEVQNGI 331
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/54 (68%), Positives = 44/54 (81%)
Frame = +3
Query: 90 RLAGCLSTAFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDSSVPVWS 251
+L+G GSGTNLDSARFR+LLS++L IA +SCHG+IIGEHGDSSV VWS
Sbjct: 149 KLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWS 202
>U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate
dehydrogenase protein.
Length = 333
Score = 188 bits (457), Expect = 5e-48
Identities = 103/223 (46%), Positives = 145/223 (65%), Gaps = 11/223 (4%)
Frame = +2
Query: 2 IIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVHRVRH*LGLGTVPLPAVGQAR 181
IIPQL+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV G GT + AR
Sbjct: 120 IIPQLVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERV------FGSGT----NLDSAR 169
Query: 182 YRY------HVLPXXXXXXXXXXXXSSMVC----INIAGVRLSDLNNQIGTDDDPENWK- 328
+R+ ++ P S V +N+AGV L ++ IG D E+W+
Sbjct: 170 FRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWSGVNVAGVTLHEIKPDIGEKTDNEHWEA 229
Query: 329 ELHENVVKSAYEVIKLKGYTSWAIGLSLAQIVRAILTNANSVHAVSTYLKGEHGIEDEVF 508
E+H+ VV SAYE+IKLKGYTSWAIGLS+A+I + I +N+ +V A+ST +KG HGI D+V+
Sbjct: 230 EIHKKVVDSAYEIIKLKGYTSWAIGLSVAKIAQGIFSNSRNVFALSTNVKGFHGINDDVY 289
Query: 509 LSLPCVLSHCGVSDVIRQPLTELEVAQLSGNLLKSWLKLRDNL 637
LSLP VL G++ V++Q LTE EV +L N K+ L++++ +
Sbjct: 290 LSLPVVLGSAGLTHVVKQQLTEAEVQKLH-NSAKALLEVQNGI 331
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/54 (68%), Positives = 44/54 (81%)
Frame = +3
Query: 90 RLAGCLSTAFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDSSVPVWS 251
+L+G GSGTNLDSARFR+LLS++L IA +SCHG+IIGEHGDSSV VWS
Sbjct: 149 KLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWS 202
>L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate
dehydrogenase protein.
Length = 333
Score = 188 bits (457), Expect = 5e-48
Identities = 103/223 (46%), Positives = 145/223 (65%), Gaps = 11/223 (4%)
Frame = +2
Query: 2 IIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVHRVRH*LGLGTVPLPAVGQAR 181
IIPQL+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV G GT + AR
Sbjct: 120 IIPQLVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERV------FGSGT----NLDSAR 169
Query: 182 YRY------HVLPXXXXXXXXXXXXSSMVC----INIAGVRLSDLNNQIGTDDDPENWK- 328
+R+ ++ P S V +N+AGV L ++ IG D E+W+
Sbjct: 170 FRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWSGVNVAGVTLHEIKPDIGEKTDNEHWEA 229
Query: 329 ELHENVVKSAYEVIKLKGYTSWAIGLSLAQIVRAILTNANSVHAVSTYLKGEHGIEDEVF 508
E+H+ VV SAYE+IKLKGYTSWAIGLS+A+I + I +N+ +V A+ST +KG HGI D+V+
Sbjct: 230 EIHKKVVDSAYEIIKLKGYTSWAIGLSVAKIAQGIFSNSRNVFALSTNVKGFHGINDDVY 289
Query: 509 LSLPCVLSHCGVSDVIRQPLTELEVAQLSGNLLKSWLKLRDNL 637
LSLP VL G++ V++Q LTE EV +L N K+ L++++ +
Sbjct: 290 LSLPVVLGSAGLTHVVKQQLTEAEVQKLH-NSAKALLEVQNGI 331
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/54 (68%), Positives = 44/54 (81%)
Frame = +3
Query: 90 RLAGCLSTAFIGSGTNLDSARFRYLLSDRLGIATTSCHGYIIGEHGDSSVPVWS 251
+L+G GSGTNLDSARFR+LLS++L IA +SCHG+IIGEHGDSSV VWS
Sbjct: 149 KLSGLPRERVFGSGTNLDSARFRFLLSEKLNIAPSSCHGWIIGEHGDSSVAVWS 202
>Z82262-5|CAE17771.1| 679|Caenorhabditis elegans Hypothetical
protein C43F9.10 protein.
Length = 679
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 476 KGEHGIEDEVFLSLPCVLSHCGVSDVIRQPLTE-LEVAQLSGNLLKSWLKLRDNL 637
K E+EVF LP +L D +R+PLTE LE + L + K +N+
Sbjct: 513 KAHDTYEEEVFKKLPDILFMLDRPDKLRRPLTEPLEKDDIFKEALATLRKYENNV 567
>AF063007-1|AAC16430.2| 730|Caenorhabditis elegans Hypothetical
protein R119.1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -2
Query: 475 EISRDRMNAVSVREYSPHDLSQRQSDSPGSVSLQFDDFVSTFHDILVKLLP 323
++ +DR AV++ + PH Q Q +S ++ D F+ FHD+ + P
Sbjct: 146 KVYKDREEAVNLLKKLPH--LQLQRESLKKITTSLDAFLHLFHDLQSLMKP 194
>Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 2 IIPQLIKYSPDTILVIASNPVD 67
I+ L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133
>Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +2
Query: 2 IIPQLIKYSPDTILVIASNPVD 67
I+ L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,518
Number of Sequences: 27780
Number of extensions: 323832
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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