Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30992
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    26   0.32 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 287 NNQIGTDDDPENWKELHENVVKSAYE 364
           +NQ+  D   + WKE+   VV+ AY+
Sbjct: 28  SNQLIIDKSLKGWKEVEYEVVRDAYD 53


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 544 DSTVTQHARQRQKYFVFDA 488
           DS    ++R   KYF+FDA
Sbjct: 542 DSEWPSYSRDEPKYFIFDA 560


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 563 PLTELEVAQLSGNLL 607
           PL  LE+ +LSGN L
Sbjct: 888 PLRSLEILRLSGNRL 902


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 351 KVLTKSSN*RDTLPGLSDCRWLRS 422
           ++LTK +  R   P  S+C   RS
Sbjct: 338 RILTKGARARGNQPSTSECGEFRS 361


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 407  SLAQIVRAILTNANSVHAVSTYLKGEH 487
            SL + VRA+     SVH   +Y    H
Sbjct: 1047 SLVEAVRAVQRGEMSVHRAGSYYGVPH 1073


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,424
Number of Sequences: 438
Number of extensions: 4531
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)