Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30988
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    28   1.3  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    27   2.2  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.8  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.7  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.7  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   6.7  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   8.9  

>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 5   SSAMHHSHNQR*RMCNFN**HYGSKTQCQKYSLL 106
           SS ++HS+N+R  +CNFN  +  SK     Y +L
Sbjct: 122 SSNLNHSNNRRQTICNFNMANDASKENETPYMVL 155


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -1

Query: 346 LCIKHILHCDLKLIVQINRVISAVMNNFNDISLSNRSLIFPSFIIPGHVIISNVYTSPF 170
           L I H L C+  L  ++NR      +  + +  S   + +  F+I     IS V  SPF
Sbjct: 483 LFIVHYLSCEKVLCEKLNRNCMNAQSLMSSLGFSVPPMSYAEFLIISSFHISAVKRSPF 541


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 534 YAASDVLSLVNPAIYAYMSSNIMPENQQLFEELSMSKCLCIFNPQK 671
           + +S   S++  A  A  +S +  E+ ++ E LSM+K  C+F+P +
Sbjct: 132 FGSSSTFSIIQHA--AKFASGV--ESDKVLEHLSMAKSGCLFDPDE 173


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 540 ASDVLSLVNPAIYAYMSSNIMPENQQLFEELSMSKCLCIFNPQKVKLRQRPKKN 701
           A +V+ L++PA+Y  + S I PE    F  L ++     F+ ++ +++Q  K N
Sbjct: 496 AGNVVGLLSPALYILILSIIFPEKYD-FNRL-LATFAMHFSSEEDEIQQTKKLN 547


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 661 LNMHKHLLMLNSSKSCWFS 605
           + MHKH L+L  +   WF+
Sbjct: 103 IEMHKHALLLQEAPDIWFN 121


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 328 LHCDLKLIVQINRVISAVMNNFNDISLSNRSLIFPSF 218
           ++ D K I+ +N  +   M  ++D+   + SLIFP F
Sbjct: 333 INSDFK-IISLNEALFESMLGYSDLLTKDISLIFPDF 368


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 DVIKIIHDCRNDSVNLYNQFEITMKNVFDT 343
           ++IK+ H    D + L   F + + N+FDT
Sbjct: 290 NIIKVFHGATMDIIWLQRDFGLYVVNLFDT 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,363
Number of Sequences: 5004
Number of extensions: 66061
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)