Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30988
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964... 40 0.003
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 30 1.7
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979... 29 3.0
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 29 4.0
08_02_0564 - 18745057-18745701,18745759-18745883,18745938-187460... 29 4.0
04_04_0284 + 24133397-24133483,24133843-24133979,24134311-241345... 29 5.3
12_01_1074 - 11164802-11164813,11165122-11165172,11165358-111654... 28 7.0
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 28 7.0
07_03_0674 + 20598668-20598774,20599456-20600467 28 9.3
>01_05_0387 -
21695277-21695351,21696186-21696228,21696325-21696454,
21696812-21697028,21697202-21697248,21698132-21698228,
21698637-21698687,21698788-21698919,21699345-21699499,
21700461-21700534,21700566-21700730,21701368-21701420
Length = 412
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 257 VIKIIHDCRNDSVNLYNQFEITMKNVFDT 343
V K+IHDC+ DS LY QF I + NV DT
Sbjct: 181 VTKVIHDCKRDSEALYFQFGIKLHNVMDT 209
Score = 34.7 bits (76), Expect = 0.081
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +3
Query: 69 MAPKRNAKNIVSFDCEGINLGLKGVLTLCQIATLNGEVYTLDIMTCPGMINEGKIKDLLE 248
+ P K ++ FDCEG++L G L + QIA VY +D + + E K LE
Sbjct: 120 LEPSAAQKLVIGFDCEGVDLCRHGALCIMQIA-FPDAVYLVDAIEGGKELIEA-CKPALE 177
Query: 249 SEMSLKL 269
SE K+
Sbjct: 178 SEYVTKV 184
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 564 NPAIYAYMSSNIMPENQQLFEELSMSKCLCIFNPQKVKLRQRPKKN*H 707
NP I + ++ + QLFEEL+ +K QK++L P + H
Sbjct: 650 NPCIVQLLDMEVLSDPHQLFEELNKAKQAAASKKQKLQLLFCPMSDQH 697
>01_01_1214 -
9793854-9794003,9795418-9795456,9795604-9795702,
9795779-9795907,9796473-9796619,9797513-9797643,
9798497-9798716,9798858-9798951,9799021-9799133,
9799799-9799903,9800008-9800112,9800762-9800849,
9800933-9801054,9801130-9801189,9802313-9802408,
9802506-9802658,9802752-9802838,9803995-9804062,
9804429-9804552,9805057-9805152,9805250-9805359,
9805459-9805573,9806877-9806942,9807260-9807420,
9807927-9808167
Length = 972
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 501 PVSLILRYKFFNCSFIGFIGALYSSHRAFKL 409
P+S IL +K + +F G+I L+SSH F L
Sbjct: 776 PLSDILAFKKLSKAFYGYIEVLFSSHITFVL 806
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 60 DSIMAPKRNAKNIVSFDCEGINLGLKGVLTLCQIATLN 173
DS++ K NI C + L KGV+ C+I N
Sbjct: 344 DSVLQVKGKVNNITIDKCSKMGLLFKGVVAACEIVNCN 381
>08_02_0564 -
18745057-18745701,18745759-18745883,18745938-18746039,
18746071-18746485
Length = 428
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 471 RTCTVGSKILGPQPLTKDMIIY 536
RT G ++LGPQP++ D++ Y
Sbjct: 265 RTLLCGPRLLGPQPMSSDVVPY 286
>04_04_0284 +
24133397-24133483,24133843-24133979,24134311-24134599,
24134723-24134829,24134905-24135052,24135260-24135458,
24135545-24135785,24135888-24135984,24136413-24136492,
24136533-24136551
Length = 467
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 275 DCRNDSVNLYNQFEITMKNVFDTXXXXXXXXXXXXGVPVYKVKNLSLNA 421
+C++ L N+ ITMK++ +T G+P Y + N L +
Sbjct: 264 ECKHQGETLVNEGVITMKDIEETKSGKVGTGVLNVGLPAYVILNALLRS 312
>12_01_1074 -
11164802-11164813,11165122-11165172,11165358-11165459,
11165877-11165937,11166276-11168320
Length = 756
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +3
Query: 519 KDMIIYAASDVLSLVNPAIYAYMSSNIMPENQQLFEELSMSKCLC 653
KD++ SD + ++ Y+ SN++ + +QLF+ + + +C
Sbjct: 311 KDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVC 355
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 501 PVSLILRYKFFNCSFIGFIGALYSSHRAFKL 409
P+S IL +K + +F G+I L+S+H F L
Sbjct: 873 PLSDILAFKKLSKAFYGYIEVLFSNHITFVL 903
>07_03_0674 + 20598668-20598774,20599456-20600467
Length = 372
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 446 MNPMKEQLKNLYRRIKDTGPATSYKRYDNLC 538
+NP KE+++NL++R+ P D +C
Sbjct: 260 LNPHKERMENLFKRLSPWAPELYVHERDVIC 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,304,829
Number of Sequences: 37544
Number of extensions: 377873
Number of successful extensions: 877
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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