Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30988
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.047
SB_52755| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16)                 31   1.0  
SB_15097| Best HMM Match : p450 (HMM E-Value=0)                        31   1.3  
SB_31021| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_46898| Best HMM Match : Amelogenin (HMM E-Value=4.2)                29   5.4  

>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +2

Query: 254 DVIKIIHDCRNDSVNLYNQFEITMKNVFDT 343
           +++K+ HDCR+ S  L++ + + + NVFDT
Sbjct: 197 NILKVFHDCRHPSDALFHLYSVRLINVFDT 226


>SB_52755| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16)
          Length = 366

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 483 VGSKILGPQPLTKDMIIYAASDVLSLVNPAIYAYMSSNIMPENQQLFEEL 632
           VG  ++ P P   D++   A  + SL+NP +Y +   +     Q    ++
Sbjct: 278 VGGSLMPPVPFWLDIVFLYARFLTSLINPLLYTFFKMDFKQAKQSFLRKI 327


>SB_15097| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1310

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 555  SLVNPAIYAYMSSNIMPENQQLFEELSMSKC 647
            SL+NP IY+Y+         QLF++ + S+C
Sbjct: 1271 SLINPVIYSYLVPEFKKTISQLFKQKNASQC 1301


>SB_31021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 486 GSKILGPQPLTKDMIIYAASDV-LSLVNPAIYAYMSSNIMPENQQLFEELSMSKCLCIFN 662
           G+ IL     T  ++     DV L  V  AI A++S  +          +S+ +CL I+ 
Sbjct: 74  GTGILAQPLYTTHIVTEIEGDVTLFCVTGAITAFVSYTLAGAGLFTLTAISVDRCLAIYR 133

Query: 663 PQKVKLRQRPK 695
           P K +    PK
Sbjct: 134 PMKYRACVTPK 144


>SB_46898| Best HMM Match : Amelogenin (HMM E-Value=4.2)
          Length = 210

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 323 MKNVFDTXXXXXXXXXXXXGVPVYKVKNLSLNALCELYNAPMNPMKEQLKNLYRRIKD 496
           +K + DT              P+ ++ N  L  L E+ N P+ P+KE L     R+K+
Sbjct: 53  LKEMLDTPLCPLKEMLDTPLCPLKEMLNTPLCPLKEMLNTPLCPLKEMLNTPLCRLKE 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,264,717
Number of Sequences: 59808
Number of extensions: 485672
Number of successful extensions: 1102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)