Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30988
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58745-2|AAU05593.1|  569|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U58745-1|AAB00620.2|  574|Caenorhabditis elegans Hypothetical pr...    33   0.22 
AC006633-5|AAO21429.1|  506|Caenorhabditis elegans Prion-like-(q...    29   2.7  
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q...    29   2.7  
Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical p...    29   4.7  
AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical...    28   8.3  

>U58745-2|AAU05593.1|  569|Caenorhabditis elegans Hypothetical
           protein C10G6.1b protein.
          Length = 569

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 257 VIKIIHDCRNDSVNLYNQFEITMKNVFDT 343
           V+K+IHD R  +  L +++ + M+NVFDT
Sbjct: 372 VVKVIHDARRVASLLAHKYAVHMRNVFDT 400


>U58745-1|AAB00620.2|  574|Caenorhabditis elegans Hypothetical
           protein C10G6.1a protein.
          Length = 574

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 257 VIKIIHDCRNDSVNLYNQFEITMKNVFDT 343
           V+K+IHD R  +  L +++ + M+NVFDT
Sbjct: 372 VVKVIHDARRVASLLAHKYAVHMRNVFDT 400


>AC006633-5|AAO21429.1|  506|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
           isoform b protein.
          Length = 506

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 522 DMIIYAASDVLSLVNPAIYAYMSSNIMPENQQLFEELSMSKCLC 653
           D +++  + +  LV   +    S+  +PE + L+E++S  +CLC
Sbjct: 169 DALLFWINKICLLVRDDVEREDSNTNIPEMEDLYEDISDGQCLC 212


>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
           isoform a protein.
          Length = 1128

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 522 DMIIYAASDVLSLVNPAIYAYMSSNIMPENQQLFEELSMSKCLC 653
           D +++  + +  LV   +    S+  +PE + L+E++S  +CLC
Sbjct: 169 DALLFWINKICLLVRDDVEREDSNTNIPEMEDLYEDISDGQCLC 212


>Z93383-12|CAB07628.2|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.7a protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -1

Query: 358 SMGSLCIKHILHCDLKLIVQINRVISAVMNNFNDISLSNRSLIFPSFIIPGHVIISNVYT 179
           S+     + I+   L L V IN+    V++ FN  ++ N +LI    IIP  +I +  YT
Sbjct: 41  SLSIFYCRFIIDVFLTLSVSINKAYFLVISLFNQYAVKNLALI---LIIPSLMIATMRYT 97

Query: 178 SPFRV 164
             F +
Sbjct: 98  LGFLI 102


>AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.4 protein.
          Length = 546

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 39  RECATLIDSIMAPKRNAKNIVSFDCEGINLGLKGVLTLCQIATLNGE 179
           R+C TLI    +PK    +++S D  G   G+ G+  L +I  L+G+
Sbjct: 190 RQCLTLIGVHPSPKGKGVHVLSIDGGGTR-GMMGLEVLEKIEKLSGK 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,550,593
Number of Sequences: 27780
Number of extensions: 373130
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)