Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30988
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   1.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   9.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   9.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 277 VMNNFNDISLSNRSLIFPSFIIPGHVIISNVYTSPFRVAI 158
           +  N   I  SN SL+FP+ I   H    NV+    ++A+
Sbjct: 467 IPQNLGVIGTSNLSLVFPNDIKVDHEYDQNVWVLSNKLAM 506


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 407 LSLNALCELYNAPMNPMKEQLKNLYRRI 490
           L  + L  ++   +NP K QLKN+ +++
Sbjct: 449 LEKHELANVHPVGINPGKMQLKNIIKKL 476


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 352 PCCVAITTTGCAC 390
           P C+ I   GC C
Sbjct: 61  PLCIKICAPGCVC 73


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +1

Query: 352 PCCVAITTTGCAC 390
           P C+ I   GC C
Sbjct: 61  PLCIKICAPGCVC 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,881
Number of Sequences: 438
Number of extensions: 4763
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)