Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30988
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing pro...    39   0.004
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi...    28   7.7  

>At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing
           protein / K homology domain-containing protein / KH
           domain-containing protein contains Pfam profiles
           PF01612: 3'-5' exonuclease, PF00013: KH domain
          Length = 341

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +2

Query: 257 VIKIIHDCRNDSVNLYNQFEITMKNVFDT 343
           + K+IHDC+ DS  LY QF I + NV DT
Sbjct: 109 ITKVIHDCKRDSEALYFQFGIRLHNVVDT 137



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 22/65 (33%), Positives = 33/65 (50%)
 Frame = +3

Query: 75  PKRNAKNIVSFDCEGINLGLKGVLTLCQIATLNGEVYTLDIMTCPGMINEGKIKDLLESE 254
           P    K ++ FDCEG++L   G L + QIA  N  +Y +D++   G +     K  LES 
Sbjct: 50  PSPEKKLVIGFDCEGVDLCRHGKLCIMQIAFSNA-IYLVDVIE-GGEVIMKACKPALESN 107

Query: 255 MSLKL 269
              K+
Sbjct: 108 YITKV 112


>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 700

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +3

Query: 471 RTCTVGSKILGPQPLTKDMIIYAASDVLSLVNPAIYAYMSSNIMPENQQLFEEL 632
           R+C+  + ++  + +   ++ ++    + L+N AI AY     + + ++LFEE+
Sbjct: 69  RSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEM 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,433
Number of Sequences: 28952
Number of extensions: 326610
Number of successful extensions: 796
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)