Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30987
         (702 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7VP25 Cluster: Probable fimbrial outer membrane usher ...    37   0.55 
UniRef50_Q7RRL3 Cluster: Putative uncharacterized protein PY0070...    35   2.2  
UniRef50_A0CLT5 Cluster: Chromosome undetermined scaffold_206, w...    35   2.2  
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    34   3.9  
UniRef50_A3H5P6 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_O66162 Cluster: ORF I protein; n=1; Streptomyces kasuga...    33   6.8  

>UniRef50_Q7VP25 Cluster: Probable fimbrial outer membrane usher
           protein; n=1; Haemophilus ducreyi|Rep: Probable fimbrial
           outer membrane usher protein - Haemophilus ducreyi
          Length = 833

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -1

Query: 693 YY*QSANNFYVLTHNRVXXXXXX*NFNWILQIGRNIFKYNNFINQTVYRQYDF 535
           Y+ Q + NFY LT ++        N N  L I RNI  YNN I+ ++Y    F
Sbjct: 520 YWDQESTNFYSLTLSKAFDIGKLKNVNVNLSINRNI--YNNVIDNSIYLSTSF 570


>UniRef50_Q7RRL3 Cluster: Putative uncharacterized protein PY00706;
           n=7; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY00706 - Plasmodium yoelii yoelii
          Length = 1390

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = -1

Query: 672 NFYVLTHNRVXXXXXX*NFNWILQIGRNIFKYNNFINQTVYRQ-YDFIVLYNSESVLPLH 496
           N Y  THN V          +IL+   +I KY   I  T Y   Y+  +L+ S  +    
Sbjct: 536 NVYKNTHNNVISLFENMTHYFILEDCDSILKYLQIIYVTRYMNIYNINILFYSIWLNSTF 595

Query: 495 VFLYNILKTVTPLAAYKSSTLPSKLFPYQANIYT-YHEQILFPL 367
             +Y +   +  L+ +KSS +  K    Q +IY  Y++Q++F L
Sbjct: 596 FKIYQVKNVLFFLSLFKSSFV-IKGMDLQKSIYNWYNKQLIFYL 638


>UniRef50_A0CLT5 Cluster: Chromosome undetermined scaffold_206,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_206,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 996

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = -2

Query: 641 YIYNYYKISTGFSR*AEIYLNTIILLIRLFIDNMILLFSIILRAFCLSMY 492
           Y++N Y I+  F    +++  TII++I ++ +  +  F  IL A CL++Y
Sbjct: 786 YLFNEYNINRSFWEWVKLWKKTIIIVILIYFETNV-YFKGILIAMCLTIY 834


>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 23/98 (23%), Positives = 44/98 (44%)
 Frame = -1

Query: 672 NFYVLTHNRVXXXXXX*NFNWILQIGRNIFKYNNFINQTVYRQYDFIVLYNSESVLPLHV 493
           NFY  T+N++       NF ++ +I    FKYN +    +  +Y+  ++YN+  +  L+ 
Sbjct: 575 NFYKYTYNKLFFIKKYNNFLYLYEI----FKYNWYKYLLLNNKYNLYIIYNN-YIKYLYK 629

Query: 492 FLYNILKTVTPLAAYKSSTLPSKLFPYQANIYTYHEQI 379
           +  NI         Y ++        Y+ N Y Y+  +
Sbjct: 630 YNININLYFIKNLFYNNNNFIHNHIIYKNNYYIYNNNM 667


>UniRef50_A3H5P6 Cluster: Putative uncharacterized protein; n=1;
           Caldivirga maquilingensis IC-167|Rep: Putative
           uncharacterized protein - Caldivirga maquilingensis
           IC-167
          Length = 267

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 21/76 (27%), Positives = 40/76 (52%)
 Frame = -1

Query: 579 YNNFINQTVYRQYDFIVLYNSESVLPLHVFLYNILKTVTPLAAYKSSTLPSKLFPYQANI 400
           Y   I+  +Y   D+++ Y  + ++     L NI+ ++ P++   S +L S L+ + A++
Sbjct: 150 YVTLISLLIYAVIDYVISYRLKPIIVHLRELTNIMVSLVPISI--SISLISLLYYFTAHV 207

Query: 399 YTYHEQILFPLYICVY 352
               EQ+L P YI  Y
Sbjct: 208 ---TEQVLIPFYIISY 220


>UniRef50_O66162 Cluster: ORF I protein; n=1; Streptomyces
           kasugaensis|Rep: ORF I protein - Streptomyces
           kasugaensis
          Length = 78

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 402 CLPDMGIACWEAYYSYKQPG-VSLSLKYCIRIHGEA 506
           CL + G   WEAY+S+++PG   L  ++  R H EA
Sbjct: 5   CLAEDGCVSWEAYHSHEEPGRFVLVERWASRAHWEA 40


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,931,904
Number of Sequences: 1657284
Number of extensions: 10278813
Number of successful extensions: 23517
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23507
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)