Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30987
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   2.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.6  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   4.5  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.9  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   7.9  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.9  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -1

Query: 606  LQIGRNIFKYNNFINQTVYRQYDFIVLYNSESV-LPLHV--FLYNILKTVTPLAAYKSST 436
            L+ GR+I +Y      T++  Y F+  ++++ V LP  V   +  +L+ +T +   K   
Sbjct: 818  LKSGRDILRYKAVTANTLFSIYGFLSAFDNKKVTLPDKVVSLMIELLENLTAVNDPKLIP 877

Query: 435  LPSKLFPYQANIY 397
              SK + + A +Y
Sbjct: 878  YISKSYAFLAYLY 890


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = -1

Query: 534 IVLYNSESVLPLHVFLYNILKTVTPLAAYKSSTLPSKLFPYQANIYTYHEQILFPL 367
           I  +   +  P HV +  ++     L +     +P    PY   I+++ E+ L+PL
Sbjct: 294 IDFFTPSTAFPTHVQILGVINEQPKLFSVHDEVIPFSFNPYNDLIFSFKEK-LYPL 348


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 534 IVLYNSESVLPLHVFLYNILKTVTPLAA---YKSSTLPSKLFPYQANIYTYHEQILFP 370
           +V+ N   VLPL + LY+ +  V P+ A    KS  L  KL  Y      Y + I  P
Sbjct: 135 MVIRNENIVLPLDIPLYDRIIYVEPVPATLSNKSLLLAGKLRKYLKEFLPYVDAIGTP 192


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 396  YKCLPDMGIACWEAYYSYKQPG 461
            ++C+PD  +  WE+Y  +K+ G
Sbjct: 1237 FRCVPDDEMLTWESYNEWKKYG 1258


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 612  WILQIGRNIFKYNNFINQTVYRQYDFIVLYNS-ESVL 505
            W+LQ+    F+    + Q+V   Y+F +L NS +S+L
Sbjct: 2159 WVLQLSPTKFREMLNVYQSVADFYEFSILQNSVQSIL 2195


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 380 FCFLFISVFTIYP 342
           FC L +SVFT+YP
Sbjct: 412 FCALTLSVFTVYP 424


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 498 HVFLYNILKTVTPLAAYK 445
           H F+Y +LK  TPL  Y+
Sbjct: 100 HPFIYRLLKLQTPLETYR 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,075
Number of Sequences: 5004
Number of extensions: 47888
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)