Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30987
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211...    29   4.7  
02_02_0725 + 13367157-13367364,13367492-13367773,13367985-13369195     28   6.2  
09_04_0149 - 15108796-15109353,15109590-15110756,15111571-151116...    28   8.3  

>07_01_0292 -
           2117212-2117326,2117402-2117527,2117654-2117791,
           2117904-2118323,2118421-2118591,2118701-2118880,
           2118988-2119140,2119226-2119384,2119841-2120152,
           2120285-2120452,2120851-2121050,2122207-2122589,
           2123244-2123625
          Length = 968

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 369 EETKSVHDRYKCLPDMGIACWEAY 440
           EE K + DR KCL D  ++C +A+
Sbjct: 206 EENKDLRDRVKCLLDYQLSCRKAF 229


>02_02_0725 + 13367157-13367364,13367492-13367773,13367985-13369195
          Length = 566

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 429 WEAYYSYKQPGVSLSLKYCIRIHGEAERSQNYREQ*NHIVYK 554
           W A   Y QP   + L+Y     GE E S  +    +H+V+K
Sbjct: 483 WMATNFYGQPARDMQLRYVEYYVGEEETSLKHNYSRDHMVFK 524


>09_04_0149 -
           15108796-15109353,15109590-15110756,15111571-15111640,
           15113747-15113808
          Length = 618

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -1

Query: 597 GRNIFKYNNFINQTVYRQY--DFIVLYNSESVLPLHVFLYNILKTVTPLAAYKSSTLPSK 424
           G  IFK + FIN ++ R +    IVL +++++LP    L  I + +  +A+ K+S  P+ 
Sbjct: 119 GNLIFKIDVFINSSILRSWKDSIIVLQSTKALLPWSEELKVIGRCIDAIAS-KTSVDPAN 177

Query: 423 L 421
           +
Sbjct: 178 V 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,180,535
Number of Sequences: 37544
Number of extensions: 237489
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)