Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30987
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52846| Best HMM Match : ig (HMM E-Value=9e-12)                      31   0.90 
SB_12096| Best HMM Match : ig (HMM E-Value=9.4e-33)                    31   0.90 
SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)                      28   6.4  

>SB_52846| Best HMM Match : ig (HMM E-Value=9e-12)
          Length = 330

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +1

Query: 286 NNQGKSNSVLSEFTVLSEPGYIVNTDIKRKQNLFMIGINVCL 411
           NNQGK+ S LS+  V   PG+IV      K N+ M G  V L
Sbjct: 61  NNQGKTESQLSQLKVFVPPGWIVKP--PPKMNIPMYGGAVLL 100


>SB_12096| Best HMM Match : ig (HMM E-Value=9.4e-33)
          Length = 942

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +1

Query: 286 NNQGKSNSVLSEFTVLSEPGYIVNTDIKRKQNLFMIGINVCL 411
           NNQGK+ S LS+  V   PG+IV      K N+ M G  V L
Sbjct: 645 NNQGKTESQLSQLKVFVPPGWIVKP--PPKMNIPMYGGAVLL 684


>SB_57283| Best HMM Match : HEAT (HMM E-Value=6.3)
          Length = 378

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 552 YRQYDFIVLYNSESVLPLHVFLYNILKTVT 463
           Y    FI+LYN    LP  +FL+++  T T
Sbjct: 270 YVDIRFILLYNRHETLPQSLFLFSVYSTWT 299



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 552 YRQYDFIVLYNSESVLPLHVFLYNILKTVT 463
           Y    FI+LYN    LP  +FL+++  T T
Sbjct: 326 YVDIRFILLYNRHETLPQSLFLFSVYSTWT 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,715,193
Number of Sequences: 59808
Number of extensions: 320087
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)