Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30987
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass...    29   3.2  
AC087081-14|AAK66032.1|  250|Caenorhabditis elegans Hypothetical...    29   4.3  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    28   5.6  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    28   5.6  
U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 59 protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 447  KSSTLPSKLFPYQANIYTYHEQILFPLYICVY 352
            + S LP  +FP QA  + YHE      Y+CV+
Sbjct: 1419 RRSRLPEVMFPTQAKYFAYHEP-----YLCVF 1445


>AC087081-14|AAK66032.1|  250|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.5 protein.
          Length = 250

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 567 INQTVYRQYDFIVLYNSESVLPLHVFLYNILK 472
           + +T+Y  Y F ++Y   ++  LH+FL NI K
Sbjct: 4   VGRTLYFLYIFALVYLINNMYGLHIFLVNIKK 35


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   RDIFSAVRSGCP*FCVDIEIAMNKCVKGSDLEVNKIQ 111
           RD+F  + SG    CV+ ++A N  +K  D E   +Q
Sbjct: 186 RDMFETMTSGLNYMCVEQKLAFNATIKCIDDEAGVVQ 222


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   RDIFSAVRSGCP*FCVDIEIAMNKCVKGSDLEVNKIQ 111
           RD+F  + SG    CV+ ++A N  +K  D E   +Q
Sbjct: 186 RDMFETMTSGLNYMCVEQKLAFNATIKCIDDEAGVVQ 222


>U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical
           protein K10B2.5 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 286 NNQGKSNSVLSEFTVLSEPGY 348
           + + ++NSVLS  TVLS PGY
Sbjct: 820 HRRARNNSVLSNRTVLSMPGY 840


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,546,609
Number of Sequences: 27780
Number of extensions: 255095
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)