Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30987
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.92 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.9  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 423 LFPYQANIYTYHEQILFPLYICVYYIS 343
           L+ Y+ + Y    Q ++PL  C+YY S
Sbjct: 282 LYVYEDSTYDDINQWVYPLTGCLYYFS 308


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 369 EETKSVHDRYKCLPDMGIACW 431
           EE + VHD Y C+ D G   W
Sbjct: 474 EEYEYVHDEYTCM-DCGPGKW 493


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = -1

Query: 591 NIFKYNNFINQTVYRQYDFIVLYNSESVLPLHVFLYNILKTVTPLAAYKSSTLPSKLFPY 412
           N +KY+N+ N       ++   YN+        ++ NI +   P+  Y  +  P  + P+
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFPPRPMGPW 146


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = -1

Query: 591 NIFKYNNFINQTVYRQYDFIVLYNSESVLPLHVFLYNILKTVTPLAAYKSSTLPSKLFPY 412
           N +KY+N+ N       ++   YN+        ++ NI +   P+  Y  +  P  + P+
Sbjct: 87  NNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFPPRPMGPW 146


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 348 YSKHRYKEETKSVHDR-----YKCLPDMGIACWEAYYSYKQPGVSLSL 476
           +S  R  +    V DR     +  L D+ I CW + + ++  G ++ +
Sbjct: 301 FSIERSSQSVAEVMDRNGVLFFGLLSDLAIGCWNSEHFFEYGGNNIEI 348


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 567 INQTVYRQYDFIVLYNSES 511
           +N+ VY+Q D+IV  +S S
Sbjct: 938 VNKKVYKQNDYIVDESSSS 956


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 212 KPTLTNFEVKCCGN 171
           KPTL  ++++C G+
Sbjct: 31  KPTLPGYKIECVGD 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,558
Number of Sequences: 438
Number of extensions: 3984
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)