Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30987
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein ...    31   0.74 
At4g26050.1 68417.m03750 leucine-rich repeat family protein cont...    28   5.2  
At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A...    28   6.9  

>At1g75710.1 68414.m08795 zinc finger (C2H2 type) family protein
           contains zinc finger, C2H2 type, domain, PROSITE:PS00028
          Length = 462

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 567 INQTVYRQYDFIVLYNSESVLPLHVFLYNILKT 469
           +N  VY   + +V+YN  ++LP  V +Y +L++
Sbjct: 430 VNAGVYSNLEELVVYNPRAILPCFVVIYKVLES 462


>At4g26050.1 68417.m03750 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
          Length = 383

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -1

Query: 570 FINQTVYRQYDFIVLYNSESVLPLHVFLYNILKTVTPLAAYKS 442
           FIN + YRQ D I         P HV L+N  + ++PL+AY S
Sbjct: 344 FINVSDYRQIDGIAS-------PRHVSLFNPRRLLSPLSAYFS 379


>At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 510

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 286 NNQGKSNSVLSEFTVLSEPGYIVNTDIKRKQNLFMIGINVCLI 414
           NN   +N V + +  L     + NT+   KQNLF+  +N+C +
Sbjct: 79  NNNNNNNGVFTPYEALPSFKDVPNTE---KQNLFIKKLNLCRV 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,328
Number of Sequences: 28952
Number of extensions: 219371
Number of successful extensions: 459
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)